Below is a list of the tools and resources that have had files downloaded directly through NITRC. They are ranked in order starting with the tool/resource with file releases that have been downloaded the most.

You may click on the tool/resource name to get to the Summary page for that tool/resource.

View Other Top Categories

Rank
Tool/Resource name
Downloads
1
MRIcron
860444
2
Nilearn
488407
3
ITK-SNAP
409905
4
FCP/INDI PRIVATE SITE
279402
5
1000 Functional Connectomes Project
171320
6
IIT Human Brain Atlas (v.5.0)
150219
7
MRIcroGL
148046
8
CONN : functional connectivity toolbox
146598
9
DTI-TK
88123
10
BrainNet Viewer
83858
11
IBSR
70771
12
Multi-Modal MRI Reproducibility Resource
59406
13
WFU_PickAtlas
59063
14
BioImage Suite
54009
15
age-ility
48582
16
BXH/XCEDE Tools
44271
17
PANDA: a pipeline tool for diffusion MRI
41050
18
EEGLAB
39661
19
Solar Eclipse Imaging Genetics tools
39566
20
The Neuro Bureau
38428
21
JIST: Java Image Science Toolkit
38314
22
Waxholm Space Atlas of the Sprague Dawley Rat Brain
38062
23
FreeSurfer
37842
24
TOADS-CRUISE Brain Segmentation Tools
36106
25
GIFTI
35157
26
fNIRS Data Analysis Environment
32962
27
Functional Imaging BIRN
32690
28
Generalized PPI Toolbox
30658
29
NITRC Computational Environment (NITRC-CE)
28669
30
3T DWI test-retest reliability dataset
28306
31
BIDScoin
27156
32
BrainMap Database
25084
33
NIDB - Neuroinformatics Database
24755
34
Homer2
23074
35
NeuroDebian
21511
36
Network-Based Statistic (NBS)
21056
37
fMRI-CPCA
20885
38
Anima
20805
39
BrainVisa Morphologist extensions
20490
40
NYU CSC TestRetest
19834
41
UNC 0-1-2 Infant Atlases
18342
42
Mango
17415
43
XNAT Extras
17203
44
MITK Diffusion
17122
45
Neuroimaging Made Easy Blog
16125
46
Automatic Registration Toolbox
15426
47
GRETNA
15166
48
Data Format Tools
14581
49
3D Slicer
14511
50
Surf Ice
14340
51
QuickNII - Serial section aligner to volumetric atlases
14021
52
Brain Biomechanics Imaging Resources
13912
53
Talairach Daemon
13910
54
Freesurfer fsaverage
13891
55
Spatially Constrained Parcellation
13812
56
Diffusion Toolkit / TrackVis
13771
57
Vaa3D and Vaa3D-Neuron
13505
58
Brainstorm
13504
59
SRI24 Atlas: Normal Adult Brain Anatomy
12788
60
Melbourne Subcortex Atlas
12751
61
DCP：Diffusion Connectome Pipeline
12722
62
CBS High-Res Brain Processing Tools
12622
63
dcm2nii
12559
64
libminc - Medical Image NetCDF library
12521
65
Group ICA Toolbox (GIFT and EEGIFT)
12372
66
MRtrix
12294
67
BrainMask Volume Processing Tool
11911
68
Computational Morphometry Toolkit (CMTK)
11702
69
FSL
11468
70
3DSlicerLupusLesionModule
11442
71
Artifact Detection Tools (ART)
11387
72
DWI/DTI Quality Control Tool: DTIPrep
11137
73
CANDI Neuroimaging Access Point
11112
74
BrainSuite
10982
75
Subject Order-Independent Group ICA
10971
76
Human Imaging Database (HID)
10877
77
TumorSim
10863
78
BrainVISA
10798
79
2008 MICCAI MS Lesion Segmentation Challenge
10792
80
GraphVar: A user-friendly toolbox for comprehensive graph analyses of functional brain connectivity
10471
81
Hammer And WML Modules for 3D Slicer
10454
82
NeuroImaging Analysis Kit (NIAK)
10256
83
NODDI Matlab Toolbox
9743
84
SPM for fNIRS toolbox
9724
85
Source Information Flow Toolbox
9654
86
Diffusional Kurtosis Estimator
9531
87
4D UNC Neonatal and Infant Cortical Surface Atlases
9425
88
Simulated DW-MRI Brain Data Sets for Quantitative Evaluation of Estimated Fiber Orientations
9382
89
TEMPORAL LOBE EPILPSY MULTIPLE MODALITY DATA
9340
90
NIRS-KIT: A MATLAB toolbox for both task and resting-state fNIRS data analysis
9276
91
NIfTI
9080
92
CBICA: Cancer Imaging Phenomics Toolkit (CaPTk)
8937
93
ENIGMA-DTI pipeline
8888
94
Task Independent Fluctuations Discussion
8696
95
SPHARM-PDM Toolbox
8530
96
MARS (Multi-Atlas Robust Segmentation)
8381
97
Awake Rat rsfMRI Database
8314
98
Robust Brain Extraction (ROBEX)
8221
99
Multimodal Visual Consciousness Study Dataset
8041
100
iBEAT
7995