Search

Clear search

Close search

Main menu

Google apps

DTI-TK

1–30 of 339

0 selected

Matthew Hoptman, … Martin Domin4

4/5/23

need to flip images

Hi Gary! I know, it's an ancient thread, but as I have the same issue and am looking for a

unread,

need to flip images

Hi Gary! I know, it's an ancient thread, but as I have the same issue and am looking for a

4/5/23

Lara Viola, … Parker, Chris3

10/28/22

Hi Lara, It seems to be working just fine for me. I can access the link you sent (pdf attached, in

unread,

Hi Lara, It seems to be working just fine for me. I can access the link you sent (pdf attached, in

10/28/22

Kyle K, Hui Zhang2

10/28/22

mask pathology?

Hi Kyle, Yes, this is possible although this feature is not currently made available through the

unread,

mask pathology?

Hi Kyle, Yes, this is possible although this feature is not currently made available through the

10/28/22

Kyle K, Hui Zhang2

10/28/22

source forge site down?

Hi Kyle, Thanks for your interest in using DTI-TK. I'm pleased to report that the site is now

unread,

source forge site down?

Hi Kyle, Thanks for your interest in using DTI-TK. I'm pleased to report that the site is now

10/28/22

Peng Ren, Gary Zhang10

4/8/22

Asking for dti_diffeomorphic_population Error

Hi Peng, If you need to do intra-subject alignment at the first stage, you may find the new DTI-TK

unread,

Asking for dti_diffeomorphic_population Error

Hi Peng, If you need to do intra-subject alignment at the first stage, you may find the new DTI-TK

4/8/22

4/8/22

Announcing several addons to DTI-TK

Dear all, Pleased to announce the availability of several addons for DTI-TK we have developed. 1) A

unread,

Announcing several addons to DTI-TK

Dear all, Pleased to announce the availability of several addons for DTI-TK we have developed. 1) A

4/8/22

mbl...@gmail.com, Chris Parker3

9/23/20

Possible compatibility bug with fsleyes?

Thanks Manuel. I was just looking into it this morning and came to the same conclusion. It looks like

unread,

Possible compatibility bug with fsleyes?

Thanks Manuel. I was just looking into it this morning and came to the same conclusion. It looks like

9/23/20

SIMON JONES, Hui Zhang2

4/29/20

brainstem cmrep

Hi Simon, Indeed, we don't include lower portion of the brain stem because there we can no longer

unread,

brainstem cmrep

Hi Simon, Indeed, we don't include lower portion of the brain stem because there we can no longer

4/29/20

Molly Memel, … Kayti Thorn15

4/22/20

dti_diffeomorphic_population Error: Failed to find header file for 'dti_scl_aff_diffeo.df.nii.gz'

Hello all, I was having a similar problem as the one Molly and David described above. My processing

unread,

dti_diffeomorphic_population Error: Failed to find header file for 'dti_scl_aff_diffeo.df.nii.gz'

Hello all, I was having a similar problem as the one Molly and David described above. My processing

4/22/20

SIMON JONES, … Chris Parker15

11/13/19

Affine Registration to MNI Space chops off top of brain

Hi Ariadna, Your population -> atlas transformation appears to be the correct size, but your

unread,

Affine Registration to MNI Space chops off top of brain

Hi Ariadna, Your population -> atlas transformation appears to be the correct size, but your

11/13/19

Arnold Evia, Hui Zhang2

10/17/19

Converting DTI-TK rigid transforms to ITK format

Hi Arnold, While it is possible to convert the format, the real difficulty lies in different

unread,

Converting DTI-TK rigid transforms to ITK format

Hi Arnold, While it is possible to convert the format, the real difficulty lies in different

10/17/19

yj.ell...@gmail.com, … Hui Zhang4

10/15/19

DTI-TK/TBSS plugin - a issue with generating 1mm^3 template

Hi Ariadna, The files to use are the ones ending with *diffeo.nii.gz. Have you taken a look at these

unread,

DTI-TK/TBSS plugin - a issue with generating 1mm^3 template

Hi Ariadna, The files to use are the ones ending with *diffeo.nii.gz. Have you taken a look at these

10/15/19

Ariadna Albajara Sáenz, Hui Zhang2

9/28/19

Questions regarding preprocessing

Hi Ariadna, See my comments below. Gary On Sat, Sep 28, 2019 at 9:41 AM Ariadna Albajara Sáenz <

unread,

Questions regarding preprocessing

Hi Ariadna, See my comments below. Gary On Sat, Sep 28, 2019 at 9:41 AM Ariadna Albajara Sáenz <

9/28/19

8/2/18

condor_qsub issue

Hi All, To run DTITK in parallel we are using HTCondor. HTCondor has its own version of qsub called

unread,

condor_qsub issue

Hi All, To run DTITK in parallel we are using HTCondor. HTCondor has its own version of qsub called

8/2/18

Manuel Blesa Cábez, … Hui Zhang4

6/16/18

error CMREP compilation

Hi Manuel and Jeff, Thanks for reviving this thread. Note that cmrep is a 3rd party tool that DTI-TK

unread,

error CMREP compilation

Hi Manuel and Jeff, Thanks for reviving this thread. Note that cmrep is a 3rd party tool that DTI-TK

6/16/18

6/15/18

CMRep Compiling Error

Hi, I am currently trying to compile cm-rep using cmake but am running into an assortment of errors.

unread,

CMRep Compiling Error

Hi, I am currently trying to compile cm-rep using cmake but am running into an assortment of errors.

6/15/18

6/6/18

error in dti_diffeomorphic_population

Dear Gary, we are currently working on a DTI analysis of a subsample of the eNKI dataset. We

unread,

error in dti_diffeomorphic_population

Dear Gary, we are currently working on a DTI analysis of a subsample of the eNKI dataset. We

6/6/18

5/22/18

on filtering tractography with inclusion and exclusion ROIs

Hi, I am currently working on filtering a brain tractography using TractTool. Instructions in "

unread,

on filtering tractography with inclusion and exclusion ROIs

Hi, I am currently working on filtering a brain tractography using TractTool. Instructions in "

5/22/18

5/22/18

Following the "Building your own TSA template" tutorial I generated the brain tractography

unread,

Following the "Building your own TSA template" tutorial I generated the brain tractography

5/22/18

Xiaoying Guo, Hui Zhang2

5/18/18

TVAnisotropy not found

Apologies. Indeed that is an outdated command. I have updated the page just now to reflect the new

unread,

TVAnisotropy not found

Apologies. Indeed that is an outdated command. I have updated the page just now to reflect the new

5/18/18

5/14/18

Longitudinal DTI-TK pipeline & from DTI-TK to TBSS

Dear Gary and DTI_TK experts, I have been trying to work out the longitudinal DTI_TK proprecessing

unread,

Longitudinal DTI-TK pipeline & from DTI-TK to TBSS

Dear Gary and DTI_TK experts, I have been trying to work out the longitudinal DTI_TK proprecessing

5/14/18

Ben Wagner, Hui Zhang2

5/9/18

ixi_adult_template to MNI

The basic idea is presented here: http://dti-tk.sourceforge.net/pmwiki/pmwiki.php?n=Documentation.

unread,

ixi_adult_template to MNI

The basic idea is presented here: http://dti-tk.sourceforge.net/pmwiki/pmwiki.php?n=Documentation.

5/9/18

armstro...@gmail.com, Hui Zhang3

4/16/18

Documentation for version 2.3.1

Thanks Gary. Claire On Saturday, April 14, 2018 at 2:04:44 AM UTC+10, Gary wrote: Hi Claire, All the

unread,

Documentation for version 2.3.1

Thanks Gary. Claire On Saturday, April 14, 2018 at 2:04:44 AM UTC+10, Gary wrote: Hi Claire, All the

4/16/18

clev...@umn.edu, Hui Zhang2

3/28/18

Jacobian Limit Fix

Hi Duncan, This problem often occurs near the top and/or bottom part of the volumes. The deformation

unread,

Jacobian Limit Fix

Hi Duncan, This problem often occurs near the top and/or bottom part of the volumes. The deformation

3/28/18

Michael, Hui Zhang3

3/16/18

Visualizing several groups of tracts

Hi Gary, Indeed, the forum i was targeting is still down, and i posted here by mistake, my apologies.

unread,

Visualizing several groups of tracts

Hi Gary, Indeed, the forum i was targeting is still down, and i posted here by mistake, my apologies.

3/16/18

nicola spotorno, Hui Zhang2

2/19/18

DTI-TK web site is down

Hi Nicola, The website is back now. Apparently the site was being migrated over the last couple of

unread,

DTI-TK web site is down

Hi Nicola, The website is back now. Apparently the site was being migrated over the last couple of

2/19/18

12/21/17

Segmentation Fault while running cmrep_vskel (TSA Advanced Tutorial) and possible solution

I ran into the following error while running cmrep_vskel step from TSA Advanced tutorial: TSAtry]$ ~/

unread,

Segmentation Fault while running cmrep_vskel (TSA Advanced Tutorial) and possible solution

I ran into the following error while running cmrep_vskel step from TSA Advanced tutorial: TSAtry]$ ~/

12/21/17

Gustavo Sudre, … Manuel Blesa Cábez5

11/28/17

mode of anisotropy

Hello experts, I was wondering if is it possible to use another maps for the TSA, not derived from a

unread,

mode of anisotropy

Hello experts, I was wondering if is it possible to use another maps for the TSA, not derived from a

11/28/17

11/27/17

compile DTI-TK on MacOS Sierra (10.12.6)

Hi Gary, I've been trying to compile DTITK code on a MacOS. I've already built ITK and VTK in

unread,

compile DTI-TK on MacOS Sierra (10.12.6)

Hi Gary, I've been trying to compile DTITK code on a MacOS. I've already built ITK and VTK in

11/27/17

Paul Chou, … Philip A Cook15

8/1/17

About longitudinal voxel-wised DTI analysis using DTI-TK

Hi, The dti_warp_to_template script calls dfRightComposeAffine and then deformationSymTensor3DVolume.

unread,

About longitudinal voxel-wised DTI analysis using DTI-TK

Hi, The dti_warp_to_template script calls dfRightComposeAffine and then deformationSymTensor3DVolume.

8/1/17