<div dir="ltr">Hi Jian,<div><br></div><div>I enabled the AnalyzeNiftiIO plugin and am able to load the GFA nii file into the paraview but was not able to adjust the origin manually! I am hoping your new documentation will have that info.</div><div>Also to make the colors of the glyphs to have RGB color coding based on their primary orientation.</div><div><br></div><div>I look forward to your updated instructions on the visualization aspects for outputs from DMRITool.</div><div><br></div><div>Thanks so much for your help!</div><div>Sincerely,</div><div>Nagesh</div></div><div class="gmail_extra"><br><div class="gmail_quote">On Tue, Mar 24, 2015 at 7:38 AM, Nagesh Adluru <span dir="ltr"><<a href="mailto:nagesh.adluru@gmail.com" target="_blank">nagesh.adluru@gmail.com</a>></span> wrote:<br><blockquote class="gmail_quote" style="margin:0 0 0 .8ex;border-left:1px #ccc solid;padding-left:1ex"><div dir="ltr"><div>Hi Jian,</div><div><br></div>Thanks so much for the help and for going to add to the documentation. I will try it out.<div><br></div><div>Sincerely,</div><div>Nagesh</div></div><div class="HOEnZb"><div class="h5"><div class="gmail_extra"><br><div class="gmail_quote">On Mon, Mar 23, 2015 at 10:09 PM, Jian Cheng <span dir="ltr"><<a href="mailto:jian.cheng.1983@gmail.com" target="_blank">jian.cheng.1983@gmail.com</a>></span> wrote:<br><blockquote class="gmail_quote" style="margin:0 0 0 .8ex;border-left:1px #ccc solid;padding-left:1ex">
<div text="#000000" bgcolor="#FFFFFF">
<div>Hi Nagesh, <br>
<br>
Please check the data formats supported in paraview. <br>
<a href="http://www.paraview.org/Wiki/ParaView/Data_formats" target="_blank">http://www.paraview.org/Wiki/ParaView/Data_formats</a><br>
Paraview originally can visualize vtk files. <br>
For the GFA map which is in nifti format, paraview can also
visualize it when you enable the AnalyzeNiftiIO plugin. <br>
You can enable it by clicking "Tools" -> "Manage Plugins" ->
"AnalyzeNiftiIO". Note that it supports *.nii file, but not
*.nii.gz file, and you may need to set the origin manually in
paraview such that the gfa map can be visualized in the same
coordinate as the EAP profile in vtk format. <br>
You can also enable other useful plugins, e.g. "quadview". <br>
<br>
Thanks for your feedback. I will add more explanation on it to the
documentation. <br>
<br>
best,<br>
Jian Cheng<div><div><br>
<br>
On 03/23/2015 05:32 PM, Nagesh Adluru wrote:<br>
</div></div></div>
<blockquote type="cite"><div><div>
<div dir="ltr">Hello Jian,
<div><br>
</div>
<div>Hope all is well! I am new to paraview and could you put a
simple tutorial on how to load the EAP profile vtk files
obtained from DMRITool in paraview with an underlay of the GFA
image?</div>
<div><br>
</div>
<div>The glyphs load fine in paraview but I am not able to
figure out how to get the GFA underlay in paraview!</div>
<div><br>
</div>
<div>Thanks so much for your help!</div>
<div>Sincerely,</div>
<div>Nagesh</div>
</div>
<br>
<fieldset></fieldset>
<br>
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