<html>
<head>
<meta http-equiv="Content-Type" content="text/html; charset=iso-8859-1">
<style type="text/css" style="display:none"><!--P{margin-top:0;margin-bottom:0;} --></style>
</head>
<body dir="ltr" style="font-size:12pt;color:#000000;background-color:#FFFFFF;font-family:Calibri,Arial,Helvetica,sans-serif;">
<font face="Calibri,Arial,Helvetica,sans-serif" size="3" color="black"><span style="font-size:12pt;background-color:white;" dir="ltr">
<div style="margin-top:0;margin-bottom:0;">Dear GAT experts,<br>
<br>
I'm trying to run some graph theoretical analyses on resting-state fMRI data, but in the first step (Network Measures) I already get this error:</div>
<div style="margin-top:0;margin-bottom:0;"><br>
</div>
<div style="margin-top:0;margin-bottom:0;">please type name of the Data set in single quotation: 'ABIDE'<br>
please type the lowest density of interest (e.g. 0.01): 0.24<br>
please type the highest density of interest (e.g. 0.6) : 0.50<br>
please type the density interval (setps) of interest (e.g. 0.01): 0.02<br>
any covariates: 1 for yes , 2 for no: 2<br>
loading the input data....<br>
number of null networks (e.g. 20): 20<br>
one (type 1) or two (type 2) -tailed test: 2<br>
significance threshold level (e.g. 0.05): 0.05<br>
calculating threshold level. it might take tens of minutes depending on the number of networks....<br>
calculating network measures at each density: 1 out of 13...<br>
calculating network measures at each density: 2 out of 13...<br>
calculating network measures at each density: 3 out of 13...<br>
calculating network measures at each density: 4 out of 13...<br>
calculating network measures at each density: 5 out of 13...<br>
calculating network measures at each density: 6 out of 13...<br>
calculating network measures at each density: 7 out of 13...<br>
calculating network measures at each density: 8 out of 13...<br>
calculating network measures at each density: 9 out of 13...<br>
calculating network measures at each density: 10 out of 13...<br>
calculating network measures at each density: 11 out of 13...<br>
calculating network measures at each density: 12 out of 13...<br>
calculating network measures at each density: 13 out of 13...<br>
type name of the 1st group in single quotations: 'CON'<br>
type name of the 2nd group in single quotations: 'ASD'<br>
type number of subjects in the 1st group: 79<br>
type number of subjects in the 2nd group: 69<br>
<span style="color: rgb(255, 0, 0);">Index exceeds matrix dimensions.</span><br style="color: rgb(255, 0, 0);">
<span style="color: rgb(255, 0, 0);"></span><br style="color: rgb(255, 0, 0);">
<span style="color: rgb(255, 0, 0);">Error in NetMes_vs_Density_vsNull_final_binary_Corrected_GUI_Functionals (line 228)</span><br style="color: rgb(255, 0, 0);">
<span style="color: rgb(255, 0, 0);">NetMes_Bin=NetMes_Bin(1:n1+n2,MinIdx:MaxIdx);</span><br style="color: rgb(255, 0, 0);">
<span style="color: rgb(255, 0, 0);"></span><br style="color: rgb(255, 0, 0);">
<span style="color: rgb(255, 0, 0);">Error in GAT_F>NetMesf_Callback (line 81)</span><br style="color: rgb(255, 0, 0);">
<span style="color: rgb(255, 0, 0);">NetMes_vs_Density_vsNull_final_binary_Corrected_GUI_Functionals</span><br style="color: rgb(255, 0, 0);">
<span style="color: rgb(255, 0, 0);"></span><br style="color: rgb(255, 0, 0);">
<span style="color: rgb(255, 0, 0);">Error in gui_mainfcn (line 96)</span><br style="color: rgb(255, 0, 0);">
<span style="color: rgb(255, 0, 0);"> feval(varargin{:});</span><br style="color: rgb(255, 0, 0);">
<span style="color: rgb(255, 0, 0);"></span><br style="color: rgb(255, 0, 0);">
<span style="color: rgb(255, 0, 0);">Error in GAT_F (line 42)</span><br style="color: rgb(255, 0, 0);">
<span style="color: rgb(255, 0, 0);"> gui_mainfcn(gui_State, varargin{:});</span><br style="color: rgb(255, 0, 0);">
<span style="color: rgb(255, 0, 0);"></span><br style="color: rgb(255, 0, 0);">
<span style="color: rgb(255, 0, 0);">Error in @(hObject,eventdata)GAT_F('NetMesf_Callback',hObject,eventdata,guidata(hObject))</span><br style="color: rgb(255, 0, 0);">
<span style="color: rgb(255, 0, 0);"></span><br style="color: rgb(255, 0, 0);">
<span style="color: rgb(255, 0, 0);"> </span><br style="color: rgb(255, 0, 0);">
<span style="color: rgb(255, 0, 0);">Error while evaluating uicontrol Callback</span></div>
<div style="margin-top:0;margin-bottom:0;"><br>
</div>
<div name="divtagdefaultwrapper" style="font-family:Calibri,Arial,Helvetica,sans-serif; font-size:; margin:0">
I followed previous suggestions to put first GAT and then spm8 in my path. Also, as input I use "Z.mat" which includes "Z", a 84x84x148 double matrix with input matrices from all subjects, and "names", a 1x84 cell vector with the ROI names.<br>
<br>
Does anyone have an idea as how to solve this problem?<br>
<br>
Thank you in advance!<br>
<br>
Best regards,<br>
Hannelore <br>
<br>
<br>
Hannelore Aerts<br>
Department of Data-Analysis<br>
Faculty of Psychology and Educational Sciences<br>
Ghent University<br>
</div>
</span></font>
<div id="Signature"></div>
</body>
</html>