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<p class="MsoNormal"><span lang="EN-US" style="font-size:11.0pt;font-family:"Calibri","sans-serif";color:#1F497D">Indeed, the configuration file is a plain text file that has to be created by the user (the same holds for the Linux version, so this is not a
Windows specific thing). For details on where to store the file, see <a href="http://www.brain.org.au/software/mrtrix/appendix/config.html">
<span style="color:#1F497D">http://www.brain.org.au/software/mrtrix/appendix/config.html</span></a>.<o:p></o:p></span></p>
<p class="MsoNormal"><span lang="EN-US" style="font-size:11.0pt;font-family:"Calibri","sans-serif";color:#1F497D"><o:p> </o:p></span></p>
<p class="MsoNormal"><span lang="EN-US" style="font-size:11.0pt;font-family:"Calibri","sans-serif";color:#1F497D">Cheers,<o:p></o:p></span></p>
<p class="MsoNormal"><span lang="EN-US" style="font-size:11.0pt;font-family:"Calibri","sans-serif";color:#1F497D">Ben<o:p></o:p></span></p>
<p class="MsoNormal"><span lang="EN-US" style="font-size:11.0pt;font-family:"Calibri","sans-serif";color:#1F497D"><o:p> </o:p></span></p>
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<p class="MsoNormal"><b><span lang="EN-US" style="font-size:10.0pt;font-family:"Tahoma","sans-serif"">From:</span></b><span lang="EN-US" style="font-size:10.0pt;font-family:"Tahoma","sans-serif""> mrtrix-discussion-bounces@public.nitrc.org [mailto:mrtrix-discussion-bounces@public.nitrc.org]
<b>On Behalf Of </b>Thijs Dhollander<br>
<b>Sent:</b> dinsdag 24 mei 2011 19:41<br>
<b>To:</b> mrtrix-discussion@public.nitrc.org<br>
<b>Subject:</b> RE: [Mrtrix-discussion] missing mrtrix.conf (mrtrix-0.2.9-win32.exe on WinXP) and csdeconv error<o:p></o:p></span></p>
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<p class="MsoNormal"><span lang="EN-US"><o:p> </o:p></span></p>
<p class="MsoNormal"><span style="font-size:10.0pt;font-family:"Arial","sans-serif";color:#1F497D">Hi Yong Li,<o:p></o:p></span></p>
<p class="MsoNormal"><span style="font-size:10.0pt;font-family:"Arial","sans-serif";color:#1F497D"><o:p> </o:p></span></p>
<p class="MsoNormal"><span lang="EN-US" style="font-size:10.0pt;font-family:"Arial","sans-serif";color:#1F497D">I'm also running MRtrix since some time on WinXP. If I remember it right, I think I created mrtrix.conf myself directly at C:\mrtrix.conf (i.e.
to be used system-wide).<o:p></o:p></span></p>
<p class="MsoNormal"><span lang="EN-US" style="font-size:10.0pt;font-family:"Arial","sans-serif";color:#1F497D"><o:p> </o:p></span></p>
<p class="MsoNormal"><span lang="EN-US" style="font-size:10.0pt;font-family:"Arial","sans-serif";color:#1F497D">About the "failed to converge" problem: you're probably using super-resolved CSD inherently (because the SH order you picked has more parameters
than your acquired data). This problem should normally be less severe or completely go away if you use a lower order (i.e. lower value for lmax). If you only get a few of these errors, it's probably not even a problem. ;-)<o:p></o:p></span></p>
<p class="MsoNormal"><span lang="EN-US" style="font-size:10.0pt;font-family:"Arial","sans-serif";color:#1F497D">More info at: http://www.brain.org.au/software/mrtrix/faq.html#converge
<o:p></o:p></span></p>
<p class="MsoNormal"><span lang="EN-US" style="font-size:10.0pt;font-family:"Arial","sans-serif";color:#1F497D"><o:p> </o:p></span></p>
<p class="MsoNormal"><span lang="EN-US" style="font-size:10.0pt;font-family:"Arial","sans-serif";color:#1F497D">Kind regards,<o:p></o:p></span></p>
<p class="MsoNormal"><span lang="EN-US" style="font-size:10.0pt;font-family:"Arial","sans-serif";color:#1F497D"><o:p> </o:p></span></p>
<p class="MsoNormal"><b><span style="font-size:10.5pt;font-family:"Arial","sans-serif";color:#00A1D6">Thijs Dhollander</span></b><span style="font-family:"Arial","sans-serif";color:#1F497D"><br>
</span><span style="font-size:10.5pt;font-family:"Arial","sans-serif";color:#666666">PhD Student</span><span style="font-family:"Arial","sans-serif";color:#1F497D"><br>
</span><span style="font-size:9.0pt;font-family:"Arial","sans-serif";color:#1F497D"><br>
</span><span style="font-size:9.0pt;font-family:"Arial","sans-serif";color:#666666">thijs.dhollander@uz.kuleuven.ac.be<br>
tel. +32 16 34 90 37<br>
gsm. +32 475 36 44 27</span><b><span style="font-size:8.0pt;font-family:"Arial","sans-serif";color:#00A1D6"><br>
<br>
Medical Image Computing (K.U.Leuven, ESAT/PSI, MIC)<br>
</span></b><span style="font-size:8.0pt;font-family:"Arial","sans-serif";color:#666666">Medical Imaging Research Center | UZ Gasthuisberg | Herestraat 49 - bus 7003 | B-3000 Leuven | http://www.medicalimagingcenter.be</span><span style="font-size:11.0pt;font-family:"Arial","sans-serif";color:#1F497D"><o:p></o:p></span></p>
<p class="MsoNormal"><span style="font-size:10.0pt;font-family:"Arial","sans-serif";color:#1F497D"><o:p> </o:p></span></p>
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<p class="MsoNormal"><b><span lang="EN-US" style="font-size:10.0pt;font-family:"Tahoma","sans-serif"">From:</span></b><span lang="EN-US" style="font-size:10.0pt;font-family:"Tahoma","sans-serif""> mrtrix-discussion-bounces@public.nitrc.org [mailto:mrtrix-discussion-bounces@public.nitrc.org]
<b>On Behalf Of </b>Yong Li<br>
<b>Sent:</b> dinsdag 24 mei 2011 17:51<br>
<b>To:</b> mrtrix-discussion@public.nitrc.org<br>
<b>Subject:</b> [Mrtrix-discussion] missing mrtrix.conf (mrtrix-0.2.9-win32.exe on WinXP) and csdeconv error<o:p></o:p></span></p>
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<p class="MsoNormal">Dear Ben & Donald,<br>
<br>
Thank you very much to develop such a nice software!<br>
<br>
I just installed the mrtrix-0.2.9-win32.exe on WinXP. Is it true that 'Windows installation' is stll 'Not yet supported' (./MRtrix/doc/install/windows.html)? I do not find the mrtrix.conf (./MRtrix/doc/appendix/config.html) file anywhere in my hard drive. Any
idea why and where please? My first try of analyzing my data was ok until the csdeconv error-'csdeconv: failed to converge'. How could I correct this error please? Is there a possibility to apply motion and distortion correction in the preprocessiong? Thank
you again!<br>
<br>
Sincerely yours,<br>
<br>
Yong Li, PhD<br>
----------------------------------------------<o:p></o:p></p>
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<p class="MsoNormal">Dr. Yong Li, M.Sci.<br>
Neurologische Klinik, Klinikum rechts der Isar<br>
Technische Universitaet Muenchen<br>
Ismaninger Str. 22, 81675 Muenchen<br>
Email: <a href="mailto:Yong.Li@lrz.tu-muenchen.de" target="_blank">Yong.Li@lrz.tu-muenchen.de</a>,
<a href="mailto:YongLi86@gmail.com" target="_blank">YongLi86@gmail.com</a><o:p></o:p></p>
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