Dear Thijs & Ben,<br><br>Thank you very much for your reply! It works as you suggested!<br><br>Have a nice weekend!<br><br>Yong<br><br><div class="gmail_quote"><blockquote class="gmail_quote" style="margin: 0pt 0pt 0pt 0.8ex; border-left: 1px solid rgb(204, 204, 204); padding-left: 1ex;">
Date: Wed, 25 May 2011 13:47:56 +0000<br>
From: Jeurissen Ben <<a href="mailto:Ben.Jeurissen@ua.ac.be">Ben.Jeurissen@ua.ac.be</a>><br>
Subject: RE: [Mrtrix-discussion] missing mrtrix.conf<br>
(mrtrix-0.2.9-win32.exe on WinXP) and csdeconv error<br>
To: "<a href="mailto:mrtrix-discussion@public.nitrc.org">mrtrix-discussion@public.nitrc.org</a>"<br>
<<a href="mailto:mrtrix-discussion@public.nitrc.org">mrtrix-discussion@public.nitrc.org</a>><br>
Message-ID:<br>
<<a href="mailto:384E4D541D819449ABBBD507434317D10298E7@xmail30.ad.ua.ac.be">384E4D541D819449ABBBD507434317D10298E7@xmail30.ad.ua.ac.be</a>><br>
Content-Type: text/plain; charset="us-ascii"<br>
<br>
Indeed, the configuration file is a plain text file that has to be created by the user (the same holds for the Linux version, so this is not a Windows specific thing). For details on where to store the file, see <a href="http://www.brain.org.au/software/mrtrix/appendix/config.html" target="_blank">http://www.brain.org.au/software/mrtrix/appendix/config.html</a>.<br>
<br>
Cheers,<br>
Ben<br>
<br>
From: <a href="mailto:mrtrix-discussion-bounces@public.nitrc.org">mrtrix-discussion-bounces@public.nitrc.org</a> [mailto:<a href="mailto:mrtrix-discussion-bounces@public.nitrc.org">mrtrix-discussion-bounces@public.nitrc.org</a>] On Behalf Of Thijs Dhollander<br>
Sent: dinsdag 24 mei 2011 19:41<br>
To: <a href="mailto:mrtrix-discussion@public.nitrc.org">mrtrix-discussion@public.nitrc.org</a><br>
Subject: RE: [Mrtrix-discussion] missing mrtrix.conf (mrtrix-0.2.9-win32.exe on WinXP) and csdeconv error<br>
<br>
Hi Yong Li,<br>
<br>
I'm also running MRtrix since some time on WinXP. If I remember it right, I think I created mrtrix.conf myself directly at C:\mrtrix.conf (i.e. to be used system-wide).<br>
<br>
About the "failed to converge" problem: you're probably using super-resolved CSD inherently (because the SH order you picked has more parameters than your acquired data). This problem should normally be less severe or completely go away if you use a lower order (i.e. lower value for lmax). If you only get a few of these errors, it's probably not even a problem. ;-)<br>
More info at: <a href="http://www.brain.org.au/software/mrtrix/faq.html#converge" target="_blank">http://www.brain.org.au/software/mrtrix/faq.html#converge</a><br>
<br>
Kind regards,<br>
<br>
Thijs Dhollander<br>
PhD Student<br>
<br>
<a href="mailto:thijs.dhollander@uz.kuleuven.ac.be">thijs.dhollander@uz.kuleuven.ac.be</a><br>
tel. <a href="tel:%2B32%2016%2034%2090%2037" value="+3216349037">+32 16 34 90 37</a><br>
gsm. <a href="tel:%2B32%20475%2036%2044%2027" value="+32475364427">+32 475 36 44 27</a><br>
<br>
Medical Image Computing (K.U.Leuven, ESAT/PSI, MIC)<br>
Medical Imaging Research Center | UZ Gasthuisberg | Herestraat 49 - bus 7003 | B-3000 Leuven | <a href="http://www.medicalimagingcenter.be" target="_blank">http://www.medicalimagingcenter.be</a><br>
<br>
From: <a href="mailto:mrtrix-discussion-bounces@public.nitrc.org">mrtrix-discussion-bounces@public.nitrc.org</a> [mailto:<a href="mailto:mrtrix-discussion-bounces@public.nitrc.org">mrtrix-discussion-bounces@public.nitrc.org</a>] On Behalf Of Yong Li<br>
Sent: dinsdag 24 mei 2011 17:51<br>
To: <a href="mailto:mrtrix-discussion@public.nitrc.org">mrtrix-discussion@public.nitrc.org</a><br>
Subject: [Mrtrix-discussion] missing mrtrix.conf (mrtrix-0.2.9-win32.exe on WinXP) and csdeconv error<br>
<br>
Dear Ben & Donald,<br>
<br>
Thank you very much to develop such a nice software!<br>
<br>
I just installed the mrtrix-0.2.9-win32.exe on WinXP. Is it true that 'Windows installation' is stll 'Not yet supported' (./MRtrix/doc/install/windows.html)? I do not find the mrtrix.conf (./MRtrix/doc/appendix/config.html) file anywhere in my hard drive. Any idea why and where please? My first try of analyzing my data was ok until the csdeconv error-'csdeconv: failed to converge'. How could I correct this error please? Is there a possibility to apply motion and distortion correction in the preprocessiong? Thank you again!<br>
<br>
Sincerely yours,<br>
<br>
Yong Li, PhD<br>
----------------------------------------------<br>
Dr. Yong Li, M.Sci.<br>
Neurologische Klinik, Klinikum rechts der Isar<br>
Technische Universitaet Muenchen<br>
Ismaninger Str. 22, 81675 Muenchen<br>
Email: <a href="mailto:Yong.Li@lrz.tu-muenchen.de">Yong.Li@lrz.tu-muenchen.de</a><mailto:<a href="mailto:Yong.Li@lrz.tu-muenchen.de">Yong.Li@lrz.tu-muenchen.de</a>>, <a href="mailto:YongLi86@gmail.com">YongLi86@gmail.com</a><mailto:<a href="mailto:YongLi86@gmail.com">YongLi86@gmail.com</a>><br>
</blockquote></div><br>