Dear Donald,
<div><br></div><div>I have two more questions concerning concerning the great tools </div><div><br></div><div>1) >> track_info</div><div><br></div><div>Is it possible read the count value into a variable? I tried with awk, like I do with some fsl functions:</div>
<div><br></div><div><div>track_info_output=`track_info L_SubstInn_CapsExt_tract.tck` </div></div><div><div>count=`echo $track_info_output | awk '{print $1}'`</div></div><div><br></div><div>I tooke $1 because it is in the first line of the output, however, I am puzzled to find the whole directory content in the $count and $1 corresponds to the first file in the directory, the "Tracks file:" output being further down, alphabetically inbetween all files of the directory. </div>
<div><br></div><div><br></div><div><br></div><div>2) >> normalise_tracks</div><div><br></div><div>What type of warp image is needed here? I cannot find any specifications (the ideal would be to feed in the warps created by the fsl TBSS pipeline. Is there any hope?)</div>
<div><br></div><div>Thanks again and best wishes!</div><div>Markus</div><div><br></div>