<div>D:\MRtrix>csdeconv dwi.mif -grad grad_GE.txt -lmax 2 -mask mask.mif response.txt</div><div> csd.mif -debug</div><div>csdeconv [INFO]: opening image "dwi.mif"...</div><div>csdeconv [DEBUG]: reading key/value file ".\dwi.mif"...</div>
<div>csdeconv [DEBUG]: sanitising transformation matrix...</div><div>csdeconv [DEBUG]: preparing file ".\dwi.mif"</div><div>csdeconv [DEBUG]: setting up image "dwi.mif"...</div><div>csdeconv [DEBUG]: sanitising transformation matrix...</div>
<div>csdeconv [DEBUG]: setting up data increments for "dwi.mif"...</div><div>csdeconv [DEBUG]: data increments initialised with start = 127, stride = [ -1 12</div><div>8 16384 1146880 ]</div><div>csdeconv [INFO]: opening image "mask.mif"...</div>
<div>csdeconv [DEBUG]: reading key/value file ".\mask.mif"...</div><div>csdeconv [DEBUG]: sanitising transformation matrix...</div><div>csdeconv [DEBUG]: preparing file ".\mask.mif"</div><div>csdeconv [DEBUG]: setting up image "mask.mif"...</div>
<div>csdeconv [DEBUG]: sanitising transformation matrix...</div><div>csdeconv [DEBUG]: setting up data increments for "mask.mif"...</div><div>csdeconv [DEBUG]: data increments initialised with start = 127, stride = [ -1 12</div>
<div>8 16384 ]</div><div>csdeconv [INFO]: found 14x4 diffusion-weighted encoding</div><div>csdeconv [INFO]: found 13 diffusion-weighted directions</div><div>csdeconv [INFO]: calculating even spherical harmonic components up to order 2</div>
<div>csdeconv [INFO]: setting response function from file "response.txt"</div><div>csdeconv [INFO]: setting response function using even SH coefficients: [ 1091.7</div><div>-233.58 ]</div><div>csdeconv [INFO]: using initial filter coefficients: [ 1 1 ]</div>
<div>csdeconv [DEBUG]: mapping image "dwi.mif"...</div><div>csdeconv [DEBUG]: file ".\dwi.mif" mapped at 0x1610000, size 32112918 (read-only</div><div>)</div><div>csdeconv [DEBUG]: data mapper for image "dwi.mif" mapped with segment size = 160</div>
<div>56320</div><div>csdeconv [DEBUG]: mapping image "mask.mif"...</div><div>csdeconv [DEBUG]: file ".\mask.mif" mapped at 0xfe0000, size 2294028 (read-only)</div><div><br></div><div>csdeconv [DEBUG]: data mapper for image "mask.mif" mapped with segment size = 11</div>
<div>46880</div><div>csdeconv [INFO]: calculating even spherical harmonic components up to order 2 fo</div><div>r initialisation</div><div>csdeconv [INFO]: constrained spherical deconvolution initiated successfully</div><div>
csdeconv [INFO]: creating image "csd.mif"...</div><div>csdeconv [DEBUG]: preparing file ".\csd.mif"</div><div>csdeconv [DEBUG]: setting up image ".\csd.mif"...</div><div>csdeconv [DEBUG]: sanitising transformation matrix...</div>
<div>csdeconv [DEBUG]: setting up data increments for ".\csd.mif"...</div><div>csdeconv [DEBUG]: data increments initialised with start = 0, stride = [ 6 768 9</div><div>8304 1 ]</div><div>csdeconv [DEBUG]: mapping image ".\csd.mif"...</div>
<div>csdeconv [DEBUG]: file ".\csd.mif" mapped at 0x34c0000, size 27525399 (read-writ</div><div>e)</div><div>csdeconv [DEBUG]: data mapper for image ".\csd.mif" mapped with segment size = 6</div><div>881280 (optimised)</div>
<div>csdeconv [INFO]: launching 1 threads</div><div>csdeconv: performing constrained spherical deconvolution... 100%</div><div>csdeconv [INFO]: closing image "mask.mif"...</div><div>csdeconv [DEBUG]: unmapping file ".\mask.mif"</div>
<div><br></div><div><br></div><div><br></div><br><div class="gmail_quote">李佩霖 <span dir="ltr"><<a href="mailto:lynnlee0226@gmail.com">lynnlee0226@gmail.com</a>></span> 於 2012年3月9日下午11:02 寫道：<br><blockquote class="gmail_quote" style="margin:0 0 0 .8ex;border-left:1px #ccc solid;padding-left:1ex">
Dear Ben,<div><br></div><div><div>I'm running on winXP. I try this on three computers but still fail.</div><div>I don't know what is different between my data sets. They were acquired and processed by the same way.</div>
<div>The report about csdeconv -debug is as attached.</div></div><div><br></div><div><br></div><div>Best,</div><div>Lynn<br><br><div class="gmail_quote">2012/3/9 Jeurissen Ben <span dir="ltr"><<a href="mailto:Ben.Jeurissen@ua.ac.be" target="_blank">Ben.Jeurissen@ua.ac.be</a>></span><br>
<blockquote class="gmail_quote" style="margin:0 0 0 .8ex;border-left:1px #ccc solid;padding-left:1ex"><div><div class="h5">
<div lang="NL-BE" link="blue" vlink="purple">
<div>
<p class="MsoNormal"><span lang="EN-US" style="font-size:11.0pt;font-family:"Calibri","sans-serif";color:#1f497d">Hi Lynn,<u></u><u></u></span></p>
<p class="MsoNormal"><span lang="EN-US" style="font-size:11.0pt;font-family:"Calibri","sans-serif";color:#1f497d"><u></u> <u></u></span></p>
<p class="MsoNormal"><span lang="EN-US" style="font-size:11.0pt;font-family:"Calibri","sans-serif";color:#1f497d">With just the information you provided it is impossible to figure out what went wrong.<u></u><u></u></span></p>
<p class="MsoNormal"><span lang="EN-US" style="font-size:11.0pt;font-family:"Calibri","sans-serif";color:#1f497d"><u></u> <u></u></span></p>
<p class="MsoNormal"><span lang="EN-US" style="font-size:11.0pt;font-family:"Calibri","sans-serif";color:#1f497d">We might be able to get a better idea about the problem if you would run csdeconv with the -info and -debug option and report the complete output
as well as the complete command that you issued on the command line.<u></u><u></u></span></p>
<p class="MsoNormal"><span lang="EN-US" style="font-size:11.0pt;font-family:"Calibri","sans-serif";color:#1f497d"><u></u> <u></u></span></p>
<p class="MsoNormal"><span lang="EN-US" style="font-size:11.0pt;font-family:"Calibri","sans-serif";color:#1f497d">Also provide us as much information you can think of that might be relevant:<u></u><u></u></span></p>
<p><u></u><span lang="EN-US" style="font-size:11.0pt;font-family:"Calibri","sans-serif";color:#1f497d"><span>-<span style="font:7.0pt "Times New Roman"">
</span></span></span><u></u><span lang="EN-US" style="font-size:11.0pt;font-family:"Calibri","sans-serif";color:#1f497d">What OS are you running?<u></u><u></u></span></p>
<p><u></u><span lang="EN-US" style="font-size:11.0pt;font-family:"Calibri","sans-serif";color:#1f497d"><span>-<span style="font:7.0pt "Times New Roman"">
</span></span></span><u></u><span lang="EN-US" style="font-size:11.0pt;font-family:"Calibri","sans-serif";color:#1f497d">Does it consistently fail on the same data sets? If so, is there something different about the data sets that fail? E.g. larger file
size?<u></u><u></u></span></p>
<p><u></u><span lang="EN-US" style="font-size:11.0pt;font-family:"Calibri","sans-serif";color:#1f497d"><span>-<span style="font:7.0pt "Times New Roman"">
</span></span></span><u></u><span lang="EN-US" style="font-size:11.0pt;font-family:"Calibri","sans-serif";color:#1f497d">Does it still fail if you run it on another computer?<u></u><u></u></span></p>
<p><u></u><span lang="EN-US" style="font-size:11.0pt;font-family:"Calibri","sans-serif";color:#1f497d"><span>-<span style="font:7.0pt "Times New Roman"">
</span></span></span><u></u><span lang="EN-US" style="font-size:11.0pt;font-family:"Calibri","sans-serif";color:#1f497d">…<u></u><u></u></span></p>
<p><span lang="EN-US" style="font-size:11.0pt;font-family:"Calibri","sans-serif";color:#1f497d"><u></u> <u></u></span></p>
<p class="MsoNormal"><span lang="EN-US" style="font-size:11.0pt;font-family:"Calibri","sans-serif";color:#1f497d">Cheers,<br>
Ben<u></u><u></u></span></p>
<p class="MsoNormal"><span lang="EN-US" style="font-size:11.0pt;font-family:"Calibri","sans-serif";color:#1f497d"><u></u> <u></u></span></p>
<div style="border:none;border-top:solid #b5c4df 1.0pt;padding:3.0pt 0cm 0cm 0cm">
<p class="MsoNormal"><b><span lang="EN-US" style="font-size:10.0pt;font-family:"Tahoma","sans-serif"">From:</span></b><span lang="EN-US" style="font-size:10.0pt;font-family:"Tahoma","sans-serif""> <a href="mailto:mrtrix-discussion-bounces@public.nitrc.org" target="_blank">mrtrix-discussion-bounces@public.nitrc.org</a> [mailto:<a href="mailto:mrtrix-discussion-bounces@public.nitrc.org" target="_blank">mrtrix-discussion-bounces@public.nitrc.org</a>]
<b>On Behalf Of </b>???<br>
<b>Sent:</b> vrijdag 9 maart 2012 14:30<br>
<b>To:</b> <a href="mailto:mrtrix-discussion@public.nitrc.org" target="_blank">mrtrix-discussion@public.nitrc.org</a><br>
<b>Subject:</b> [Mrtrix-discussion] csdeconv fail<u></u><u></u></span></p>
</div><div><div>
<p class="MsoNormal"><u></u> <u></u></p>
<p class="MsoNormal">To whom it may concern<u></u><u></u></p>
<div>
<p class="MsoNormal"><u></u> <u></u></p>
</div>
<div>
<p class="MsoNormal">I'm running MRtrix on Windows system. I acquired data using the same scanner and pulse sequence, and performing the same processing and using the same lmax. However, some data have error on running "csdeconv.exe", but some are ok. <u></u><u></u></p>
</div>
<div>
<p class="MsoNormal"><u></u> <u></u></p>
</div>
<div>
<p class="MsoNormal">The error massage:<u></u><u></u></p>
</div>
<div>
<div>
<p class="MsoNormal">AppName: csdeconv.exe<span> </span>
AppVer: 0.0.0.0<span> </span>ModName: ntdll.dll<u></u><u></u></p>
</div>
<div>
<p class="MsoNormal">ModVer: <a href="tel:5.1.2600.6055" value="+15126006055" target="_blank">5.1.2600.6055</a><span> </span>
Offset: 00010a19<u></u><u></u></p>
</div>
</div>
<div>
<p class="MsoNormal"><u></u> <u></u></p>
</div>
<div>
<p class="MsoNormal">How would I correct the error? I am looking forward to receiving your suggestions. Your response is highly appreciated.<u></u><u></u></p>
</div>
<div>
<p class="MsoNormal"><u></u> <u></u></p>
</div>
<div>
<p class="MsoNormal">Best,<u></u><u></u></p>
</div>
<div>
<p class="MsoNormal">Lynn<u></u><u></u></p>
</div>
</div></div></div>
</div>
<br></div></div><div class="im">_______________________________________________<br>
Mrtrix-discussion mailing list<br>
<a href="mailto:Mrtrix-discussion@www.nitrc.org" target="_blank">Mrtrix-discussion@www.nitrc.org</a><br>
<a href="http://www.nitrc.org/mailman/listinfo/mrtrix-discussion" target="_blank">http://www.nitrc.org/mailman/listinfo/mrtrix-discussion</a><br>
<br></div></blockquote></div><br></div>
</blockquote></div><br>