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Hi Dave,<br>
<br>
seems to work fine. Do you have any recommendation how many
directions to generate using gendir? And can you give me the exact
specification of the find_SH_peaks output image so that I can read
it somehow using my own code? Or is there a conversion to the FSL
peak file format?<br>
<br>
Best,<br>
Peter<br>
<br>
<br>
<div class="moz-cite-prefix">On 10/18/2012 11:37 AM, David Raffelt
wrote:<br>
</div>
<blockquote
cite="mid:CAOFq7B5S2OyMUdSzN1+gzYQF6uKi8muHtcf8HLzQSOPW_9W23Q@mail.gmail.com"
type="cite">Hi Peter,
<div>You can use the find_SH_peaks command. Note that you also
have to supply a set of directions as input, which are used as
seeds for the peak finding. You can generate these using the
gendir command.</div>
<div>
<br>
</div>
<div>Note that dir2amp can be used to convert these directions to
peak amplitudes.</div>
<div>Cheers,</div>
<div>Dave</div>
<div><br>
</div>
<div><br>
</div>
<div><br>
<br>
<div class="gmail_quote">On 18 October 2012 19:06, Peter Neher <span
dir="ltr"><<a moz-do-not-send="true"
href="mailto:p.neher@dkfz-heidelberg.de" target="_blank">p.neher@dkfz-heidelberg.de</a>></span>
wrote:<br>
<blockquote class="gmail_quote" style="margin:0 0 0
.8ex;border-left:1px #ccc solid;padding-left:1ex">Hi all, I
wondered if it is possible to directly output the fiber
directions and not only the SH representation of the ODFs.
If this is not possible, can anyone tell me how the SH file
looks like so that I can read it and extract the peaks
myself?<br>
<br>
Best<br>
Peter<br>
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</blockquote>
</div>
<br>
<br clear="all">
<div><br>
</div>
-- <br>
<div><b><font color="#ff6600">Dr David Raffelt</font></b></div>
<div><font color="#ff6600">Post Doctoral Fellow</font></div>
<div><br>
</div>
<div>The Florey Institute of Neuroscience and Mental Health</div>
<div>Melbourne Brain Centre - Austin Campus</div>
<div>245 Burgundy Street</div>
<div>Heidelberg Vic 3084
<div>Ph: <a moz-do-not-send="true" value="+61390357024">+61 3
9035 7024</a></div>
</div>
<div><a moz-do-not-send="true" value="+61390357024">www.florey.edu.au</a></div>
<br>
</div>
</blockquote>
<br>
<pre class="moz-signature" cols="72">--
Dipl.-Inform. Peter Neher
German Cancer Research Center
(DKFZ, Deutsches Krebsforschungszentrum in der Helmholtz-Gemeinschaft, Stiftung des öffentlichen Rechts)
Division of Medical and Biological Informatics
Im Neuenheimer Feld 280, D-69120 Heidelberg
Phone: 49-(0)6221-42-3552, Fax: 49-(0)6221-42-2345
E-Mail: <a class="moz-txt-link-abbreviated" href="mailto:p.neher@dkfz-heidelberg.de">p.neher@dkfz-heidelberg.de</a>, Web: <a class="moz-txt-link-abbreviated" href="http://www.dkfz.de">www.dkfz.de</a>
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