<div dir="ltr"><div><div><div>I really hope you do get it compiled natively, but I thought I'd clarify my previous post. I am not suggesting that you install ubuntu, but rather that you have a schroot debian environment _inside_ your CentOS. <br>
<br></div>Sort of this:<br><a href="http://neuro.debian.net/blog/2011/2011-12-12_schroot_fslview.html">http://neuro.debian.net/blog/2011/2011-12-12_schroot_fslview.html</a><br><br></div>This way, you have your debian binaries running alongside the RHEL ones, and both of them are native. Consider this a tentative plan B.<br>
<br></div>Luis<br></div><div class="gmail_extra"><br clear="all"><div>Dr. Luis Concha<br>Instituto de Neurobiología<br>Laboratorio C-12<br>UNAM, Campus Juriquilla<br>Boulervard Juriquilla 3001<br>Juriquilla, Querétaro.<br>
C.P. 76230<br>México<br>Tel (442) 2 38 10 53<br>Fax (442) 2 38 10 46<br><a href="http://www.inb.unam.mx" target="_blank">www.inb.unam.mx</a><br></div>
<br><br><div class="gmail_quote">On Tue, Mar 19, 2013 at 5:19 PM, Henry Mensch <span dir="ltr"><<a href="mailto:Henry.Mensch@va.gov" target="_blank">Henry.Mensch@va.gov</a>></span> wrote:<br><blockquote class="gmail_quote" style="margin:0 0 0 .8ex;border-left:1px #ccc solid;padding-left:1ex">
That's what I expected, too, but RHEL doesn't come with the -devel bundles for this stuff:<br>
<br>
[root@musca dx-4.4.4]# yum -y install gtkmm24-devel<br>
Loaded plugins: refresh-packagekit, rhnplugin<br>
This system is receiving updates from RHN Classic or RHN Satellite.<br>
Setting up Install Process<br>
No package gtkmm24-devel available.<br>
Error: Nothing to do<br>
[root@musca dx-4.4.4]# yum -y install gtkmm24-devel-2.18.2-1<br>
Loaded plugins: refresh-packagekit, rhnplugin<br>
This system is receiving updates from RHN Classic or RHN Satellite.<br>
Setting up Install Process<br>
No package gtkmm24-devel-2.18.2-1 available.<br>
Error: Nothing to do<br>
[root@musca dx-4.4.4]# yum -y list gtkmm\*<br>
Loaded plugins: refresh-packagekit, rhnplugin<br>
This system is receiving updates from RHN Classic or RHN Satellite.<br>
Installed Packages<br>
gtkmm24.x86_64 2.18.2-1.el6 @anaconda-RedHatEnterpriseLinux-201009221801.x86_64/6.0<br>
<br>
so it's not clear to me where what you found actually comes from.<br>
<div class="HOEnZb"><div class="h5"><br>
On Mar 19, 2013, at 4:10 PM, Donald Tournier wrote:<br>
<br>
> OK, I just did a very quick search and I think I know where the problem is. These packages typically come in pairs: runtime and development. The runtime would only contain the libraries, and the development package should contain everything needed to compile against it, including headers and hopefully the relevant pkg-config file. I came across this on my search: <a href="http://pkgs.org/centos-6-rhel-6/centos-rhel-i386/gtkmm24-devel-2.18.2-1.el6.i686.rpm.html" target="_blank">http://pkgs.org/centos-6-rhel-6/centos-rhel-i386/gtkmm24-devel-2.18.2-1.el6.i686.rpm.html</a> - looks like it might fit the bill...?<br>
><br>
> Cheers,<br>
><br>
> Donald.<br>
><br>
><br>
><br>
> On 20 March 2013 09:44, Henry Mensch <<a href="mailto:Henry.Mensch@va.gov">Henry.Mensch@va.gov</a>> wrote:<br>
> No, they don't. The files aren't there, and they're not in the packages.<br>
><br>
> On Mar 19, 2013, at 3:35 PM, Donald Tournier wrote:<br>
><br>
> > Assuming these files do exist, then it should be a simple matter of making sure pkg-config knows where to look for them - you should be able to set the PKG_CONFIG_PATH to achieve that, at least according the pkg-config man page.<br>
> > On Tue, Mar 19, 2013 at 3:40 PM, Henry Mensch <<a href="mailto:Henry.Mensch@va.gov">Henry.Mensch@va.gov</a>> wrote:<br>
> > I'm on a CentOS 6 system:<br>
> ><br>
> > Linux musca 2.6.32-358.0.1.el6.x86_64 #1 SMP Wed Feb 20 11:05:23 EST 2013 x86_64 x86_64 x86_64 GNU/Linux<br>
> ><br>
> > and I'm trying to build … the build fails early with these errors:<br>
> ><br>
> > [root@musca mrtrix-0.2.10]# ./build<br>
> > Package glibmm-2.4 was not found in the pkg-config search path.<br>
> > Perhaps you should add the directory containing `glibmm-2.4.pc'<br>
> > to the PKG_CONFIG_PATH environment variable<br>
> > No package 'glibmm-2.4' found<br>
> > WARNING: unable to find glibmm-2.4,gthread-2.0 configuration<br>
> > Package gtkmm-2.4 was not found in the pkg-config search path.<br>
> > Perhaps you should add the directory containing `gtkmm-2.4.pc'<br>
> > to the PKG_CONFIG_PATH environment variable<br>
> > No package 'gtkmm-2.4' found<br>
> > WARNING: unable to find gtkmm-2.4 configuration<br>
> > Package gtkmm-2.4 was not found in the pkg-config search path.<br>
> > Perhaps you should add the directory containing `gtkmm-2.4.pc'<br>
> > to the PKG_CONFIG_PATH environment variable<br>
> > No package 'gtkmm-2.4' found<br>
> > Package gtkglext-1.0 was not found in the pkg-config search path.<br>
> > Perhaps you should add the directory containing `gtkglext-1.0.pc'<br>
> > to the PKG_CONFIG_PATH environment variable<br>
> > No package 'gtkglext-1.0' found<br>
> > WARNING: unable to find gtkmm-2.4 configuration<br>
> > Package glibmm-2.4 was not found in the pkg-config search path.<br>
> > Perhaps you should add the directory containing `glibmm-2.4.pc'<br>
> > to the PKG_CONFIG_PATH environment variable<br>
> > No package 'glibmm-2.4' found<br>
> > WARNING: unable to find glibmm-2.4,gthread-2.0 configuration<br>
> > Package gtkmm-2.4 was not found in the pkg-config search path.<br>
> > Perhaps you should add the directory containing `gtkmm-2.4.pc'<br>
> > to the PKG_CONFIG_PATH environment variable<br>
> > No package 'gtkmm-2.4' found<br>
> > WARNING: unable to find gtkmm-2.4 configuration<br>
> > Package gtkmm-2.4 was not found in the pkg-config search path.<br>
> > Perhaps you should add the directory containing `gtkmm-2.4.pc'<br>
> > to the PKG_CONFIG_PATH environment variable<br>
> > No package 'gtkmm-2.4' found<br>
> > Package gtkglext-1.0 was not found in the pkg-config search path.<br>
> > Perhaps you should add the directory containing `gtkglext-1.0.pc'<br>
> > to the PKG_CONFIG_PATH environment variable<br>
> > No package 'gtkglext-1.0' found<br>
> > WARNING: unable to find gtkmm-2.4 configuration<br>
> > Traceback (most recent call last):<br>
> > File "./build", line 968, in <module><br>
> > [ Entry(item) for item in targets ]<br>
> > File "./build", line 245, in __init__<br>
> > if is_executable (<a href="http://self.name" target="_blank">self.name</a>): self.set_executable()<br>
> > File "./build", line 276, in set_executable<br>
> > '$bin$': [ <a href="http://self.name" target="_blank">self.name</a> ] })<br>
> > File "./build", line 375, in fillin<br>
> > if item in keyvalue: cmd += keyvalue[item]<br>
> > TypeError: 'NoneType' object is not iterable<br>
> > [root@musca mrtrix-0.2.10]# rpm -q -a | grep -i glibmm<br>
> > glibmm24-2.22.1-1.el6.x86_64<br>
> > ^P[root@musca mrtrix-0.2.10]# rpm -q -a | grep -i gtkmm<br>
> > gtkmm24-2.18.2-1.el6.x86_64<br>
> > [root@musca mrtrix-0.2.10]# rpm -q -a | grep glibmm<br>
> > glibmm24-2.22.1-1.el6.x86_64<br>
> ><br>
> > You can see that the libraries it seems to want have RPMs installed …<br>
> ><br>
> > and the libraries are actually present:<br>
> ><br>
> > [root@musca mrtrix-0.2.10]# find /usr -name libglibmm\* -print<br>
> > /usr/lib64/libglibmm-2.4.so.1<br>
> > /usr/lib64/libglibmm-2.4.so.1.2.0<br>
> > /usr/lib64/libglibmm_generate_extra_defs-2.4.so.1<br>
> > /usr/lib64/libglibmm_generate_extra_defs-2.4.so.1.2.0<br>
> ><br>
> > so it looks like the real problem is that there are no entries in /usr/lib64/pkgconfig for these libraries.<br>
> ><br>
> > SO: how do I get around this?<br>
> ><br>
> > --<br>
> > Henry Mensch / Systems and Storage Manager<br>
> > Center for Imaging of Neurodegenerative Diseases<br>
> > VA Medical Center, San Francisco CA USA<br>
> > a: +1.415.221.4810 x6466 / : +1.415.668.2864<br>
> > :: <a href="mailto:henry.mensch@va.gov">henry.mensch@va.gov</a><br>
> > w: <a href="http://www.cind.research.va.gov/" target="_blank">http://www.cind.research.va.gov/</a><br>
> ><br>
> ><br>
> ><br>
> ><br>
> > _______________________________________________<br>
> > Mrtrix-discussion mailing list<br>
> > <a href="mailto:Mrtrix-discussion@www.nitrc.org">Mrtrix-discussion@www.nitrc.org</a><br>
> > <a href="http://www.nitrc.org/mailman/listinfo/mrtrix-discussion" target="_blank">http://www.nitrc.org/mailman/listinfo/mrtrix-discussion</a><br>
> ><br>
> ><br>
> > _______________________________________________<br>
> > Mrtrix-discussion mailing list<br>
> > <a href="mailto:Mrtrix-discussion@www.nitrc.org">Mrtrix-discussion@www.nitrc.org</a><br>
> > <a href="http://www.nitrc.org/mailman/listinfo/mrtrix-discussion" target="_blank">http://www.nitrc.org/mailman/listinfo/mrtrix-discussion</a><br>
> ><br>
> ><br>
> ><br>
> ><br>
> > --<br>
> > Dr Jacques-Donald Tournier<br>
> > Research Fellow<br>
> ><br>
> > The Florey Institute of Neuroscience and Mental Health<br>
> > Melbourne Brain Centre - Austin Campus<br>
> > 245 Burgundy Street<br>
> > Heidelberg Vic 3084<br>
> > Ph: <a href="tel:%2B61%203%209035%207033" value="+61390357033">+61 3 9035 7033</a><br>
> > Fax: <a href="tel:%2B61%203%209035%207307" value="+61390357307">+61 3 9035 7307</a><br>
> > <a href="http://www.florey.edu.au" target="_blank">www.florey.edu.au</a><br>
> ><br>
> > _______________________________________________<br>
> > Mrtrix-discussion mailing list<br>
> > <a href="mailto:Mrtrix-discussion@www.nitrc.org">Mrtrix-discussion@www.nitrc.org</a><br>
> > <a href="http://www.nitrc.org/mailman/listinfo/mrtrix-discussion" target="_blank">http://www.nitrc.org/mailman/listinfo/mrtrix-discussion</a><br>
><br>
> --<br>
> Henry Mensch / Systems and Storage Manager<br>
> Center for Imaging of Neurodegenerative Diseases<br>
> VA Medical Center, San Francisco CA USA<br>
> a: <a href="tel:%2B1.415.221.4810%20x6466" value="+14152214810">+1.415.221.4810 x6466</a> / : <a href="tel:%2B1.415.668.2864" value="+14156682864">+1.415.668.2864</a><br>
> :: <a href="mailto:henry.mensch@va.gov">henry.mensch@va.gov</a><br>
> w: <a href="http://www.cind.research.va.gov/" target="_blank">http://www.cind.research.va.gov/</a><br>
><br>
><br>
><br>
><br>
><br>
><br>
><br>
><br>
> --<br>
> Dr Jacques-Donald Tournier<br>
> Research Fellow<br>
><br>
> The Florey Institute of Neuroscience and Mental Health<br>
> Melbourne Brain Centre - Austin Campus<br>
> 245 Burgundy Street<br>
> Heidelberg Vic 3084<br>
> Ph: <a href="tel:%2B61%203%209035%207033" value="+61390357033">+61 3 9035 7033</a><br>
> Fax: <a href="tel:%2B61%203%209035%207307" value="+61390357307">+61 3 9035 7307</a><br>
> <a href="http://www.florey.edu.au" target="_blank">www.florey.edu.au</a><br>
><br>
<br>
--<br>
Henry Mensch / Systems and Storage Manager<br>
Center for Imaging of Neurodegenerative Diseases<br>
VA Medical Center, San Francisco CA USA<br>
a: <a href="tel:%2B1.415.221.4810%20x6466" value="+14152214810">+1.415.221.4810 x6466</a> / : <a href="tel:%2B1.415.668.2864" value="+14156682864">+1.415.668.2864</a><br>
:: <a href="mailto:henry.mensch@va.gov">henry.mensch@va.gov</a><br>
w: <a href="http://www.cind.research.va.gov/" target="_blank">http://www.cind.research.va.gov/</a><br>
<br>
<br>
<br>
<br>
<br>
_______________________________________________<br>
Mrtrix-discussion mailing list<br>
<a href="mailto:Mrtrix-discussion@www.nitrc.org">Mrtrix-discussion@www.nitrc.org</a><br>
<a href="http://www.nitrc.org/mailman/listinfo/mrtrix-discussion" target="_blank">http://www.nitrc.org/mailman/listinfo/mrtrix-discussion</a><br>
</div></div></blockquote></div><br></div>