<div dir="ltr">Hi Hugh,<div><br></div><div style>Looks like your data are JPEG encoded. Having waded through the DICOM specifications (no fun at all), I eventually came across the bit that mentions that the ridiculously-named '1.2.840.10008.1.2.4.70' transfer syntax actually means 'lossless JPEG compression'. I'm afraid you're out of luck, since I've no plans to implement support for that any time soon. I also have a feeling that you'll have trouble finding other free software to read these data: in my (limited) experience, none of them support JPEG - I may be wrong though, maybe someone else on this list can suggest something else...?</div>
<div style><br></div><div style>That said, I'd be happy to help if anyone wants to try coding up support for JPEG... </div><div style><br></div><div style>Sorry I can't be more help...</div><div style>Cheers,</div>
<div style><br></div><div style>Donald.</div><div style><br></div><div style><br></div></div><div class="gmail_extra"><br><br><div class="gmail_quote">On 8 May 2013 12:47, Hugh Pemberton <span dir="ltr"><<a href="mailto:hughpemberton1@gmail.com" target="_blank">hughpemberton1@gmail.com</a>></span> wrote:<br>
<blockquote class="gmail_quote" style="margin:0 0 0 .8ex;border-left:1px #ccc solid;padding-left:1ex"><div dir="ltr">Hi mrtrix crew,<br><div class="gmail_quote"><div dir="ltr"><div><br></div><div>I've been using mrconvert to get my dcm files to nii for a while now <span style="font-family:arial,sans-serif;font-size:13px">However, out the blue I started getting error messages, the first 2 lines come up heaps of times and then it ends with the last 3 lines</span>, i've used ****** to block out a patients' name which is also the directory name<span style="font-family:arial,sans-serif;font-size:13px"> - </span></div>
<div><div style="font-family:arial,sans-serif;font-size:13px"><br></div><div style="font-family:arial,sans-serif;font-size:13px">mrconvert: unknown DICOM transfer syntax: "1.2.840.10008.1.2.4.70" in file "/home/hughp/BH-high-res-mri/***********/1.2.124.113532.172.20.128.66.20120420.75751.6031595/1.3.12.2.1107.5.2.6.14402.30000012041919563025000000476/1.3.12.2.1107.5.2.6.14402.30000012041919563025000000493.dcm" - ignored</div>
<div style="font-family:arial,sans-serif;font-size:13px">mrconvert: scanning DICOM folder "/home/hugh....20.128.66.20120420.75751.6031595" - ok</div><div style="font-family:arial,sans-serif;font-size:13px">mrconvert: no DICOM images found in "/home/hughp/BH-high-res-mri/***********/1.2.124.113532.172.20.128.66.20120420.75751.6031595"</div>
<div style="font-family:arial,sans-serif;font-size:13px">mrconvert: error opening image "/home/hughp/BH-high-res-mri/***********/1.2.124.113532.172.20.128.66.20120420.75751.6031595"</div><div style="font-family:arial,sans-serif;font-size:13px">
<br></div><div style="font-family:arial,sans-serif;font-size:13px">Thanks and hope you can help,</div><div style="font-family:arial,sans-serif;font-size:13px"><br>Best,</div><div style="font-family:arial,sans-serif;font-size:13px">
Hugh</div></div></div>
</div><br></div>
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