<div dir="ltr"><div><div><div>Hi Sjaak.<br><br></div>We were not able to compile mrtrix for CentOS 5.X, as several system libraries are too old and incompatible with mrtrix. However, we did find a solution by using a debian chroot inside CentOS that is even able to fully utilize the computing cluster that runs on CentOS. Full instructions are here:<br>
<br><a href="http://www.nitrc.org/pipermail/mrtrix-discussion/2013-July/000756.html">http://www.nitrc.org/pipermail/mrtrix-discussion/2013-July/000756.html</a><br><br></div>Best of luck.<br><br></div>Luis<br><br></div><div class="gmail_extra">
<br clear="all"><div>Dr. Luis Concha<br>Instituto de Neurobiología<br>Laboratorio C-13<br>UNAM, Campus Juriquilla<br>Boulervard Juriquilla 3001<br>Juriquilla, Querétaro.<br>C.P. 76230<br>México<br>Tel (442) 2 38 10 54<br>
Fax (442) 2 38 10 46<br><a href="http://www.inb.unam.mx" target="_blank">www.inb.unam.mx</a><br></div>
<br><br><div class="gmail_quote">On Tue, Oct 8, 2013 at 9:15 AM, <a href="mailto:Sjaak.vanAsten@radboudumc.nl">Sjaak.vanAsten@radboudumc.nl</a> <span dir="ltr"><<a href="mailto:Sjaak.vanAsten@radboudumc.nl" target="_blank">Sjaak.vanAsten@radboudumc.nl</a>></span> wrote:<br>
<blockquote class="gmail_quote" style="margin:0 0 0 .8ex;border-left:1px #ccc solid;padding-left:1ex">Dear MRTrix users,<br>
<br>
I'm trying to compile mrtrix-0.2.11 on CentOS release 5.9. All the required dependencies seem to be met, but I still get the following errors: see below...<br>
<br>
Am I forgetting some include files?<br>
<br>
Thank you for your help!<br>
<br>
Jack.<br>
<br>
ERROR: [CC] cmd/gen_unit_warp.o<br>
<br>
g++ -c -Wall -mtune=amdfam10 -fPIC -fno-strict-aliasing -DGL_GLEXT_PROTOTYPES -DUSE_TR1 -O2 -pthread -I/usr/include/glibmm-2.4 -I/usr/lib64/glibmm-2.4/<u></u>include -I/usr/include/sigc++-2.0 -I/usr/lib64/sigc++-2.0/<u></u>include -I/usr/include/glib-2.0 -I/usr/lib64/glib-2.0/include -Ilib -Isrc cmd/gen_unit_warp.cpp -o cmd/gen_unit_warp.o<br>
<br>
failed with output:<br>
<br>
src/dwi/tractography/file.h:<u></u>94: error: ‘goffset’ does not name a type<br>
src/dwi/tractography/file.h: In member function ‘void MR::DWI::Tractography::Writer:<u></u>:append(const std::vector<MR::Point, std::allocator<MR::Point> >&)’:<br>
src/dwi/tractography/file.h:<u></u>70: error: ‘goffset’ was not declared in this scope<br>
src/dwi/tractography/file.h:<u></u>70: error: expected `;' before ‘current’<br>
src/dwi/tractography/file.h:<u></u>71: error: ‘current’ was not declared in this scope<br>
src/dwi/tractography/file.h:<u></u>77: error: expected `;' before ‘end’<br>
src/dwi/tractography/file.h:<u></u>80: error: ‘end’ was not declared in this scope<br>
<br>
STOP<br>
<br>
ERROR: [CC] cmd/streamtrack.o<br>
<br>
g++ -c -Wall -mtune=amdfam10 -fPIC -fno-strict-aliasing -DGL_GLEXT_PROTOTYPES -DUSE_TR1 -O2 -pthread -I/usr/include/glibmm-2.4 -I/usr/lib64/glibmm-2.4/<u></u>include -I/usr/include/sigc++-2.0 -I/usr/lib64/sigc++-2.0/<u></u>include -I/usr/include/glib-2.0 -I/usr/lib64/glib-2.0/include -Ilib -Isrc cmd/streamtrack.cpp -o cmd/streamtrack.o<br>
<br>
failed with output:<br>
<br>
src/dwi/tractography/file.h:<u></u>94: error: ‘goffset’ does not name a type<br>
src/dwi/tractography/file.h: In member function ‘void MR::DWI::Tractography::Writer:<u></u>:append(const std::vector<MR::Point, std::allocator<MR::Point> >&)’:<br>
src/dwi/tractography/file.h:<u></u>70: error: ‘goffset’ was not declared in this scope<br>
src/dwi/tractography/file.h:<u></u>70: error: expected `;' before ‘current’<br>
src/dwi/tractography/file.h:<u></u>71: error: ‘current’ was not declared in this scope<br>
src/dwi/tractography/file.h:<u></u>77: error: expected `;' before ‘end’<br>
src/dwi/tractography/file.h:<u></u>80: error: ‘end’ was not declared in this scope<br>
<br>
<br>
-- <br>
Drs.Ing. Sjaak van Asten <a href="mailto:E%3ASjaak.vanAsten@radboudumc.nl" target="_blank">E:Sjaak.vanAsten@radboudumc.nl</a> NMR Research Technician T: +31 24 3668392/14545<br>
767 Radiology, UMC St Radboud F: <a href="tel:%2B31%2024%203540866" value="+31243540866" target="_blank">+31 24 3540866</a><br>
POBox 9101, 6500HB Nijmegen M: <a href="tel:%2B31%206%2042060726" value="+31642060726" target="_blank">+31 6 42060726</a><br>
Netherlands W:<a href="http://biomr.runmc-radiology.nl" target="_blank">http://biomr.runmc-<u></u>radiology.nl</a><br>
<br>
<br>
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The Radboud university medical centre is listed in the Commercial Register of the Chamber of Commerce under file number 41055629.<br>
<br>
<br>
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</blockquote></div><br></div>