<html>
<head>
<style><!--
.hmmessage P
{
margin:0px;
padding:0px
}
body.hmmessage
{
font-size: 12pt;
font-family:Calibri
}
--></style></head>
<body class='hmmessage'><div dir='ltr'>Dear All<br><br>I'm interested in using the improved resolution from track density images to help improve my ROI generation to select tracks from a whole brain tractography .tck file.<br><br>I can define, e.g., the PLIC much more sharply from the track density image generated from whole-brain tractography much more easily then from the standard colour coded FA maps. The orientation of the track density image depends upon the -template image supplied for tracks2prob step when generated. If I use the FA maps as the template, does this automatically put the ROI drawn from the resultant track density maps in diffusion space? If so I presume I can use these ROI to directly filter the streamlines I'm interested from the whole brain tractography .tck file without applying any transformation? <br><br>Many thanks in advance<br><br>Dan<br> </div></body>
</html>