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<div class="moz-cite-prefix">Hi Alessandro,<br>
<br>
Have a look here:
<a class="moz-txt-link-freetext" href="http://www.brain.org.au/software/mrtrix/faq.html#FSLencoding">http://www.brain.org.au/software/mrtrix/faq.html#FSLencoding</a><br>
<br>
Ideally you should extract your gradient table from the original
DICOM files. Failing that, if your acquisition was in real axial
orientation, you can copy-paste your text-files so they look like
this:
<a class="moz-txt-link-freetext" href="http://www.brain.org.au/software/mrtrix/tractography/dwi.html#dwscheme">http://www.brain.org.au/software/mrtrix/tractography/dwi.html#dwscheme</a><br>
<br>
and then feed that file to subsequent commands using the <b>-grad</b>
flag. <br>
<pre class="moz-signature" cols="72">--
Kind regards,
Ivan Alvarez
PhD Candidate
Imaging and Biophysics Unit
UCL Institute of Child Health
30 Guilford Street, London, WC1N 1EH </pre>
On 17/03/2014 12:08, Alessandro Calamuneri wrote:<br>
</div>
<blockquote
cite="mid:CAOw1OkpaCf0MAMtq0RwN55F-_qQiq2sn3874h9ugSuxjyCVEtQ@mail.gmail.com"
type="cite">
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<div dir="ltr">Hi all,
<div>I have a really basic question about data import; I checked
archives as well as web documentation, but still I did not
find a solution.</div>
<div>I have nifti dwi images, and in two separate text files b
values and gradient directions list.</div>
<div>How can I feed an external table into mrtrix using
mrconvert? </div>
<div>Best,</div>
<div>Alessandro<br clear="all">
<div><br>
</div>
-- <br>
<div dir="ltr">Alessandro Calamuneri<br>
<div>M.Sc., PhD-student in Ricerca Clinica e Traslazionale
in Neuroscienze ed Oncologia</div>
<div>Department of Neurosciences, University of Messina,
Italy</div>
<div>Via Consolare Valeria, Policlinico Universitario,
98125, Messina</div>
<div><br>
mail: <a moz-do-not-send="true"
href="mailto:alecalamuneri@gmail.com" target="_blank">alecalamuneri@gmail.com</a><br>
</div>
<div> <a moz-do-not-send="true"
href="mailto:alessandro.calamuneri@unime.it"
target="_blank">alessandro.calamuneri@unime.it</a></div>
<div> <a moz-do-not-send="true"
href="mailto:acalamuneri@unime.it" target="_blank">acalamuneri@unime.it</a><br>
<br>
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