<div dir="ltr">Hi Robert,<br><br>Thanks for the information, I followed the tutorial and finally create the connectome matrix.<br><br>Now I would like to create a connectome representation, do you know how I can do it? It's possible to create all the nodes of my atlas with MRtrix? <br>
<br>Thanks in advance.<br><br>Best regards,<br><br>Manuel Blesa<br></div><div class="gmail_extra"><br><br><div class="gmail_quote">2014-07-08 8:19 GMT+02:00 Robert Smith <span dir="ltr"><<a href="mailto:robert.smith@florey.edu.au" target="_blank">robert.smith@florey.edu.au</a>></span>:<br>
<blockquote class="gmail_quote" style="margin:0 0 0 .8ex;border-left:1px #ccc solid;padding-left:1ex"><div dir="ltr"><div><div><div>Hi Manuel (and all),<br><br></div>Yes, the <span style="font-family:courier new,monospace">labelconfig</span> step has been a stumbling block for many users.<br>
<br>When I started writing the connectome code for my own evil purposes, I wanted something as flexible as possible, that kept in line with the modular design philosophy of MRtrix. In my mind, <span style="font-family:courier new,monospace">labelconfig</span> is actually an 'essential' step for connectome construction (based on the atlases I have seen); I suspect that other software packages may somehow deal with the problem implicitly, or people have been doing this operation the slow & painful way...<br>
<br></div>I have <a href="https://github.com/jdtournier/mrtrix3/wiki/labelconfig-worked-example" target="_blank">given <span style="font-family:courier new,monospace">labelconfig</span> its own dedicated page</a> in the <a href="https://github.com/jdtournier/mrtrix3/wiki" target="_blank">MRtrix GitHub wiki</a>. I hope that the worked example there is adequate for people to wrap their heads around why this command is necessary, what its actual purpose is, and why it's beneficial for this to be an explicit step. Let me know if any aspects of its use are still unclear and I will update the page accordingly.<br>
<br></div>Best regards<br>Rob<br></div><div class="gmail_extra"><br clear="all"><div><div dir="ltr"><br>--<br><br><span style="color:rgb(255,102,0)"><b>Robert Smith, Ph.D</b><br>Research Officer, Imaging Division</span><br>
<br>The Florey Institute of Neuroscience and Mental Health<br>Melbourne Brain Centre - Austin Campus<br>245 Burgundy Street<br>Heidelberg Vic 3084<br>Ph: <a href="tel:%2B61%203%209035%207128" value="+61390357128" target="_blank">+61 3 9035 7128</a><br>
Fax: <a href="tel:%2B61%203%209035%207301" value="+61390357301" target="_blank">+61 3 9035 7301</a><br><a href="http://www.florey.edu.au/" target="_blank">www.florey.edu.au</a><br>
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<br><br><div class="gmail_quote">On Tue, Jul 8, 2014 at 3:02 AM, Manuel Blesa Cábez <span dir="ltr"><<a href="mailto:mblesac@gmail.com" target="_blank">mblesac@gmail.com</a>></span> wrote:<br><blockquote class="gmail_quote" style="margin:0 0 0 .8ex;border-left:1px #ccc solid;padding-left:1ex">
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<div dir="ltr">Dear all,<br>
<br>
I want to create the connectome using MRtrix, but I don't know exactly how to do it.<br>
<br>
I have my parcellated file and the relation between the labels and the names (similar to the example file aal.txt). What more I need to launch the labelconfig? Which are the correct input files?<br>
<br>
Thanks in advance.<br>
<br>
Best regards,<br>
<br>
Manuel Blesa<br>
</div>
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