<div dir="ltr">Hi Karine,<div><br></div><div>You'll find there is a new dedicated command for this in MRtrix3, called mrresize. That should do exactly what you need.</div><div>Cheers,</div><div><br></div><div>Donald.</div><div><br></div></div><div class="gmail_extra"><br><div class="gmail_quote">On 1 November 2014 01:33, Karine Marcotte <span dir="ltr"><<a href="mailto:karinemarcotte@live.ca" target="_blank">karinemarcotte@live.ca</a>></span> wrote:<br><blockquote class="gmail_quote" style="margin:0 0 0 .8ex;border-left:1px #ccc solid;padding-left:1ex"><div style="word-wrap:break-word;color:rgb(0,0,0);font-size:14px;font-family:Calibri,sans-serif"><div><div style="font-family:Consolas;font-size:medium">Dear all</div><div style="font-family:Consolas;font-size:medium"><br></div><div style="font-family:Consolas;font-size:medium">My question might seem easy for some of you but I haven't been able to figure out how to upsamle using Mrtrix3.</div><div style="font-family:Consolas;font-size:medium">In the former Mrtrix version (0.2.11), i used to write the following command</div><div style="font-family:Consolas;font-size:medium"><br></div><div style="font-family:Consolas;font-size:medium">mrtransform -template dwi_2x2x2.nii -upsample 2 dwi_2x2x2.nii dwi_1x1x1.nii</div><div style="font-family:Consolas;font-size:medium"><br></div><div style="font-family:Consolas;font-size:medium">However, -upsample is not a valid option in the new version.</div><div style="font-family:Consolas;font-size:medium"><br></div><div style="font-family:Consolas;font-size:medium">Thanks in advance for your help,</div><div style="font-family:Consolas;font-size:medium"><br></div><div style="font-family:Consolas;font-size:medium">Best regards,</div><div style="font-family:Consolas;font-size:medium"><br></div><div style="font-family:Consolas;font-size:medium">Karine</div></div><div>
<div><img src="cid:26E3873E-2076-426F-A246-7A96BD5960BB" type="image/png"></div></div></div>
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<br></blockquote></div><br><br clear="all"><div><br></div>-- <br><div class="gmail_signature"><div dir="ltr"><b><font color="#990000">Dr J-Donald Tournier (PhD)</font></b><br><div><font color="#990000"><br></font></div><i><font color="#990000">Senior Lecturer, </font></i><i><font color="#990000">Biomedical Engineering</font></i><div><i><font color="#990000">Division of Imaging Sciences & Biomedical Engineering<br>King's College London</font></i><div><i><font color="#990000"><br></font></i></div><div><i><font color="#990000"><b style="font-family:Calibri,sans-serif;font-size:15px"><span style="font-size:10pt">A:</span></b><span style="font-family:Calibri,sans-serif;font-size:10pt"> Department of Perinatal Imaging & Health, 1<sup>st</sup> Floor South Wing, St Thomas' Hospital, London. SE1 7EH</span><br></font></i></div><div><i><font color="#990000"><b>T:</b> +44 (0)20 7188 7118 ext 53613</font></i></div></div><div><i><font color="#990000"><b>W:</b> <a href="http://www.kcl.ac.uk/medicine/research/divisions/imaging/departments/biomedengineering" target="_blank">http://www.kcl.ac.uk/medicine/research/divisions/imaging/departments/biomedengineering</a></font></i><br></div></div></div>
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