It's on the TODO list! But we are very welcome people contributing code: <a href="http://nipy.org/nipype/devel/gitwash/index.html">http://nipy.org/nipype/devel/gitwash/index.html</a><br><br>Best,<div>Chris</div><br><div class="gmail_quote">On Thu Dec 18 2014 at 8:53:07 AM J-Donald Tournier <<a href="mailto:jdtournier@gmail.com" target="_blank" onclick="window.open('https://mail.google.com/mail/?view=cm&tf=1&to=jdtournier@gmail.com&cc=&bcc=&su=&body=','_blank');return false;">jdtournier@gmail.com</a>> wrote:<br><blockquote class="gmail_quote" style="margin:0 0 0 .8ex;border-left:1px #ccc solid;padding-left:1ex"><div dir="ltr">I have a feeling nipype would expect the 0.2.x version of MRtrix. I'd be very surprised (and most impressed) if they'd already updated everything to work with MRtrix3...<div><br></div><div>Cheers,</div><div>Donald.</div><div><br></div></div><div class="gmail_extra"></div><div class="gmail_extra"><br><div class="gmail_quote">On 18 December 2014 at 16:45, Roine Timo <span dir="ltr"><<a href="mailto:timo.roine@uantwerpen.be" target="_blank" onclick="window.open('https://mail.google.com/mail/?view=cm&tf=1&to=timo.roine@uantwerpen.be&cc=&bcc=&su=&body=','_blank');return false;">timo.roine@uantwerpen.be</a>></span> wrote:<blockquote class="gmail_quote" style="margin:0 0 0 .8ex;border-left:1px #ccc solid;padding-left:1ex">
<div>
<div style="direction:ltr;font-family:Tahoma;color:#000000;font-size:10pt">Hello,
<div><br>
</div>
<div>These two functions have been replaced with the tensor2metric function, which provides functionality for both fa and ev (vector) computation.</div>
<div><br>
</div>
<div>Cheers,</div>
<div>Timo</div>
<div><br>
</div>
<div>
<div style="font-family:Times New Roman;color:#000000;font-size:16px">
<div style="direction:ltr"><font face="Tahoma" color="#000000"><b>Lähettäjä:</b> <a href="mailto:mrtrix-discussion-bounces@public.nitrc.org" target="_blank" onclick="window.open('https://mail.google.com/mail/?view=cm&tf=1&to=mrtrix-discussion-bounces@public.nitrc.org&cc=&bcc=&su=&body=','_blank');return false;">mrtrix-discussion-bounces@<u></u>public.nitrc.org</a> [<a href="mailto:mrtrix-discussion-bounces@public.nitrc.org" target="_blank" onclick="window.open('https://mail.google.com/mail/?view=cm&tf=1&to=mrtrix-discussion-bounces@public.nitrc.org&cc=&bcc=&su=&body=','_blank');return false;">mrtrix-discussion-bounces@<u></u>public.nitrc.org</a>] käyttäjän anvi vora [<a href="mailto:anvikvora@gmail.com" target="_blank" onclick="window.open('https://mail.google.com/mail/?view=cm&tf=1&to=anvikvora@gmail.com&cc=&bcc=&su=&body=','_blank');return false;">anvikvora@gmail.com</a>] puolesta<br>
<b>Lähetetty:</b> 18. joulukuuta 2014 17:39<br>
<b>Vastaanottaja:</b> Erik Ziegler<br>
<b>Kopio:</b> nipy-devel; mrtrix mailinglist<br>
<b>Aihe:</b> Re: [Mrtrix-discussion] nipype issue<br>
</font><br>
</div><div><div>
<div></div>
<div>
<div dir="ltr">Thank you all for help on this, I appreciate.
<div><br>
</div>
<div>So the error seems to be because I am missing tensor2fa and tensor2vector, among other things, which were not in my binary folder. Then I checked CMD folder, which ./build script calls, and these were missing from there are well. When I checked the latest
commit for Mrtrix on Github (I had downloaded from Github), these were not in CMD folder there either. I then saw them in the <font face="Menlo"><span style="font-size:11px">/mrtrix3/userdoc/commands <u></u>folder as html files. </span></font></div>
<div><span style="font-size:11px;font-family:Menlo"><br>
</span></div>
<div><span style="font-size:11px;font-family:Menlo">Sorry to ask, but how do I get these commands in CMD folder or as binaries? </span></div>
<div><span style="font-size:11px;font-family:Menlo"><br>
</span></div>
<div><span style="font-size:11px;font-family:Menlo">Thanks again </span><br>
</div>
</div>
<div class="gmail_extra"><br>
<div class="gmail_quote">On Wed, Dec 17, 2014 at 5:15 PM, Erik Ziegler <span dir="ltr">
<<a href="mailto:erik.ziegler@ulg.ac.be" target="_blank" onclick="window.open('https://mail.google.com/mail/?view=cm&tf=1&to=erik.ziegler@ulg.ac.be&cc=&bcc=&su=&body=','_blank');return false;">erik.ziegler@ulg.ac.be</a>></span> wrote:
<blockquote class="gmail_quote" style="margin:0 0 0 .8ex;border-left:1px #ccc solid;padding-left:1ex">
<div dir="ltr">I'd say that Donald is right, it looks like you forgot to run sudo ./build install after ./build and that's why you don't have the binaries in your path.</div>
<div class="gmail_extra"><br>
<div class="gmail_quote">
<div>
<div>On Wed, Dec 17, 2014 at 9:02 PM, A.S. KANAAN <span dir="ltr"><<a href="mailto:amadeus.kanaan@gmail.com" target="_blank" onclick="window.open('https://mail.google.com/mail/?view=cm&tf=1&to=amadeus.kanaan@gmail.com&cc=&bcc=&su=&body=','_blank');return false;">amadeus.kanaan@gmail.com</a>></span> wrote:</div>
</div>
<blockquote class="gmail_quote" style="margin:0 0 0 .8ex;border-left:1px #ccc solid;padding-left:1ex">
<div>
<div>
<div dir="ltr">
<div>
<div>you have multiple mrtrix related crashes.. hard to say without looking at the crash file.
<br>
<br>
</div>
check the crash file by typing <br>
$nipype_display_crash 'crash_file.......'<br>
<br>
</div>
a guess is that the mrtrix environ has not been initialized. <br>
<br>
but mabye the nipype guys have some other thoughts. <br>
<br>
<br>
<br>
</div>
<br>
</div>
</div>
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<br></blockquote></div><br clear="all"><div><br></div></div><div class="gmail_extra">-- <br><div><div dir="ltr"><b><font color="#990000">Dr J-Donald Tournier (PhD)</font></b><br><div><font color="#990000"><br></font></div><i><font color="#990000">Senior Lecturer, </font></i><i><font color="#990000">Biomedical Engineering</font></i><div><i><font color="#990000">Division of Imaging Sciences & Biomedical Engineering<br>King's College London</font></i><div><i><font color="#990000"><br></font></i></div><div><i><font color="#990000"><b style="font-family:Calibri,sans-serif;font-size:15px"><span style="font-size:10pt">A:</span></b><span style="font-family:Calibri,sans-serif;font-size:10pt"> Department of Perinatal Imaging & Health, 1<sup>st</sup> Floor South Wing, St Thomas' Hospital, London. SE1 7EH</span><br></font></i></div><div><i><font color="#990000"><b>T:</b> +44 (0)20 7188 7118 ext 53613</font></i></div></div><div><i><font color="#990000"><b>W:</b> <a href="http://www.kcl.ac.uk/medicine/research/divisions/imaging/departments/biomedengineering" target="_blank">http://www.kcl.ac.uk/<u></u>medicine/research/divisions/<u></u>imaging/departments/<u></u>biomedengineering</a></font></i><br></div></div></div>
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