<html>
<head>
<meta http-equiv="Content-Type" content="text/html; charset=utf-8">
</head>
<body style="word-wrap: break-word; -webkit-nbsp-mode: space; -webkit-line-break: after-white-space;" class="">
Hello,
<div class=""><br class="">
</div>
<div class="">New to the group and mrtrix. Wondering if it’s possible to install older versions of MRtrix, such as mrtrix-0.2.12, on a Mac OS X running El Capitan?. </div>
<div class="">I used Macports to get and build dependencies. Specifically, I used <span style="widows: 1; background-color: rgb(224, 224, 224);" class="">port install glib2 glibmm libpng gtk2 gtkmm gtkglext gsl pkgconfig</span></div>
<div class="">When I try to compile MRtrix with ./build I get an enormous list of errors (a minor subset pasted below).</div>
<div class=""><br class="">
</div>
<div class="">I should perhaps note that I was able to successfully install MRtrix3 on a separate machine running El Capitan.</div>
<div class="">However, I would like to employ wrapper Matlab functions that currently work only with earlier versions of MRtrix, hence why I’d like to try and install mrtrix-0.2.12. </div>
<div class=""><br class="">
</div>
<div class="">Appreciate any insight that you can offer. Thanks very much for your help and for your time.</div>
<div class=""><br class="">
</div>
<div class="">Sincerely,</div>
<div class="">Katie</div>
<div class=""><br class="">
</div>
<div class=""><br class="">
</div>
<div class="">
<div style="margin: 0px; font-size: 11px; line-height: normal; font-family: Menlo;" class="">
./build </div>
<div style="margin: 0px; font-size: 11px; line-height: normal; font-family: Menlo;" class="">
[CC] lib/math/vector.o</div>
<div style="margin: 0px; font-size: 11px; line-height: normal; font-family: Menlo;" class="">
[CC] src/mrview/sidebar/roi_analysis.o</div>
<div style="margin: 0px; font-size: 11px; line-height: normal; font-family: Menlo;" class="">
[CC] cmd/dir2amp.o</div>
<div style="margin: 0px; font-size: 11px; line-height: normal; font-family: Menlo;" class="">
[CC] src/mrview/mode/base.o</div>
<div style="margin: 0px; font-size: 11px; line-height: normal; font-family: Menlo;" class="">
[CC] lib/file/dicom/quick_scan.o</div>
<div style="margin: 0px; font-size: 11px; line-height: normal; font-family: Menlo;" class="">
[CC] lib/image/format/list.o</div>
<div style="margin: 0px; font-size: 11px; line-height: normal; font-family: Menlo;" class="">
[CC] cmd/streamtrack.o</div>
<div style="margin: 0px; font-size: 11px; line-height: normal; font-family: Menlo;" class="">
STDERR: [CC] lib/file/dicom/quick_scan.o</div>
<div style="margin: 0px; font-size: 11px; line-height: normal; font-family: Menlo;" class="">
In file included from lib/file/dicom/quick_scan.cpp:32:</div>
<div style="margin: 0px; font-size: 11px; line-height: normal; font-family: Menlo;" class="">
In file included from lib/file/dicom/element.h:30:</div>
<div style="margin: 0px; font-size: 11px; line-height: normal; font-family: Menlo;" class="">
In file included from lib/hash_map.h:45:</div>
<div style="margin: 0px; font-size: 11px; line-height: normal; font-family: Menlo;" class="">
/Applications/Xcode.app/Contents/Developer/Toolchains/XcodeDefault.xctoolchain/usr/bin/../include/c++/v1/ext/hash_map:212:5: warning: Use of the header <ext/hash_map> is deprecated. Migrate to <unordered_map> [-W#warnings]</div>
<div style="margin: 0px; font-size: 11px; line-height: normal; font-family: Menlo;" class="">
# warning Use of the header <ext/hash_map> is deprecated. Migrate to <unordered_map></div>
<div style="margin: 0px; font-size: 11px; line-height: normal; font-family: Menlo;" class="">
^</div>
<div style="margin: 0px; font-size: 11px; line-height: normal; font-family: Menlo;" class="">
1 warning generated.</div>
<div style="margin: 0px; font-size: 11px; line-height: normal; font-family: Menlo; min-height: 13px;" class="">
<br class="">
</div>
<div style="margin: 0px; font-size: 11px; line-height: normal; font-family: Menlo;" class="">
[CC] src/mrview/window.o</div>
<div style="margin: 0px; font-size: 11px; line-height: normal; font-family: Menlo;" class="">
[CC] lib/image/format/xds.o</div>
<div style="margin: 0px; font-size: 11px; line-height: normal; font-family: Menlo;" class="">
STDERR: [CC] src/mrview/sidebar/roi_analysis.o</div>
<div style="margin: 0px; font-size: 11px; line-height: normal; font-family: Menlo;" class="">
In file included from src/mrview/sidebar/roi_analysis.cpp:24:</div>
<div style="margin: 0px; font-size: 11px; line-height: normal; font-family: Menlo;" class="">
In file included from src/mrview/window.h:36:</div>
<div style="margin: 0px; font-size: 11px; line-height: normal; font-family: Menlo;" class="">
In file included from src/mrview/display_area.h:28:</div>
<div style="margin: 0px; font-size: 11px; line-height: normal; font-family: Menlo;" class="">
src/mrview/pane.h:66:11: warning: 'gluProject' is deprecated: first deprecated in OS X 10.9 - "Use GLKMathProject" [-Wdeprecated-declarations]</div>
<div style="margin: 0px; font-size: 11px; line-height: normal; font-family: Menlo;" class="">
gluProject (pos[0], pos[1], pos[2], modelview, projection, viewport, &wx, &wy, &wz);</div>
<div style="margin: 0px; font-size: 11px; line-height: normal; font-family: Menlo;" class="">
^</div>
<div style="margin: 0px; font-size: 11px; line-height: normal; font-family: Menlo;" class="">
/System/Library/Frameworks/OpenGL.framework/Headers/glu.h:280:14: note: 'gluProject' has been explicitly marked deprecated here</div>
<div style="margin: 0px; font-size: 11px; line-height: normal; font-family: Menlo;" class="">
extern GLint gluProject (GLdouble objX, GLdouble objY, GLdouble objZ, const GLdouble *model, const GLdouble *proj, const GLint *view, GLdouble* winX, GLdouble* winY, GLdouble* winZ) OPENGL_DEPRECATED_MSG(10_0, 10_9, "Use GLKMathProject");</div>
<div style="margin: 0px; font-size: 11px; line-height: normal; font-family: Menlo;" class="">
^</div>
<div style="margin: 0px; font-size: 11px; line-height: normal; font-family: Menlo;" class="">
In file included from src/mrview/sidebar/roi_analysis.cpp:24:</div>
<div style="margin: 0px; font-size: 11px; line-height: normal; font-family: Menlo;" class="">
In file included from src/mrview/window.h:36:</div>
<div style="margin: 0px; font-size: 11px; line-height: normal; font-family: Menlo;" class="">
In file included from src/mrview/display_area.h:28:</div>
<div style="margin: 0px; font-size: 11px; line-height: normal; font-family: Menlo;" class="">
src/mrview/pane.h:73:11: warning: 'gluUnProject' is deprecated: first deprecated in OS X 10.9 - "Use GLKMathUnproject" [-Wdeprecated-declarations]</div>
<div style="margin: 0px; font-size: 11px; line-height: normal; font-family: Menlo;" class="">
gluUnProject (pos[0], pos[1], pos[2], modelview, projection, viewport, &wx, &wy, &wz);</div>
<div style="margin: 0px; font-size: 11px; line-height: normal; font-family: Menlo;" class="">
^</div>
<div style="margin: 0px; font-size: 11px; line-height: normal; font-family: Menlo;" class="">
/System/Library/Frameworks/OpenGL.framework/Headers/glu.h:297:14: note: 'gluUnProject' has been explicitly marked deprecated here</div>
<div style="margin: 0px; font-size: 11px; line-height: normal; font-family: Menlo;" class="">
extern GLint gluUnProject (GLdouble winX, GLdouble winY, GLdouble winZ, const GLdouble *model, const GLdouble *proj, const GLint *view, GLdouble* objX, GLdouble* objY, GLdouble* objZ) OPENGL_DEPRECATED_MSG(10_0, 10_9, "Use GLKMathUnproject");</div>
<div style="margin: 0px; font-size: 11px; line-height: normal; font-family: Menlo;" class="">
^</div>
<div style="margin: 0px; font-size: 11px; line-height: normal; font-family: Menlo;" class="">
2 warnings generated.</div>
<div style="margin: 0px; font-size: 11px; line-height: normal; font-family: Menlo; min-height: 13px;" class="">
<br class="">
</div>
<div style="margin: 0px; font-size: 11px; line-height: normal; font-family: Menlo;" class="">
[CC] src/mrview/pane.o</div>
<div style="margin: 0px; font-size: 11px; line-height: normal; font-family: Menlo;" class="">
[CC] src/mrview/texture.o</div>
<div style="margin: 0px; font-size: 11px; line-height: normal; font-family: Menlo;" class="">
STDERR: [CC] src/mrview/pane.o</div>
<div style="margin: 0px; font-size: 11px; line-height: normal; font-family: Menlo;" class="">
In file included from src/mrview/pane.cpp:23:</div>
<div style="margin: 0px; font-size: 11px; line-height: normal; font-family: Menlo;" class="">
src/mrview/pane.h:66:11: warning: 'gluProject' is deprecated: first deprecated in OS X 10.9 - "Use GLKMathProject" [-Wdeprecated-declarations]</div>
<div style="margin: 0px; font-size: 11px; line-height: normal; font-family: Menlo;" class="">
gluProject (pos[0], pos[1], pos[2], modelview, projection, viewport, &wx, &wy, &wz);</div>
<div style="margin: 0px; font-size: 11px; line-height: normal; font-family: Menlo;" class="">
^</div>
<div style="margin: 0px; font-size: 11px; line-height: normal; font-family: Menlo;" class="">
/System/Library/Frameworks/OpenGL.framework/Headers/glu.h:280:14: note: 'gluProject' has been explicitly marked deprecated here</div>
<div style="margin: 0px; font-size: 11px; line-height: normal; font-family: Menlo;" class="">
extern GLint gluProject (GLdouble objX, GLdouble objY, GLdouble objZ, const GLdouble *model, const GLdouble *proj, const GLint *view, GLdouble* winX, GLdouble* winY, GLdouble* winZ) OPENGL_DEPRECATED_MSG(10_0, 10_9, "Use GLKMathProject");</div>
<div style="margin: 0px; font-size: 11px; line-height: normal; font-family: Menlo;" class="">
^</div>
<div style="margin: 0px; font-size: 11px; line-height: normal; font-family: Menlo;" class="">
In file included from src/mrview/pane.cpp:23:</div>
<div style="margin: 0px; font-size: 11px; line-height: normal; font-family: Menlo;" class="">
src/mrview/pane.h:73:11: warning: 'gluUnProject' is deprecated: first deprecated in OS X 10.9 - "Use GLKMathUnproject" [-Wdeprecated-declarations]</div>
<div style="margin: 0px; font-size: 11px; line-height: normal; font-family: Menlo;" class="">
gluUnProject (pos[0], pos[1], pos[2], modelview, projection, viewport, &wx, &wy, &wz);</div>
<div style="margin: 0px; font-size: 11px; line-height: normal; font-family: Menlo;" class="">
^</div>
<div style="margin: 0px; font-size: 11px; line-height: normal; font-family: Menlo;" class="">
/System/Library/Frameworks/OpenGL.framework/Headers/glu.h:297:14: note: 'gluUnProject' has been explicitly marked deprecated here</div>
<div style="margin: 0px; font-size: 11px; line-height: normal; font-family: Menlo;" class="">
extern GLint gluUnProject (GLdouble winX, GLdouble winY, GLdouble winZ, const GLdouble *model, const GLdouble *proj, const GLint *view, GLdouble* objX, GLdouble* objY, GLdouble* objZ) OPENGL_DEPRECATED_MSG(10_0, 10_9, "Use GLKMathUnproject");</div>
<div style="margin: 0px; font-size: 11px; line-height: normal; font-family: Menlo;" class="">
^</div>
<div style="margin: 0px; font-size: 11px; line-height: normal; font-family: Menlo;" class="">
src/mrview/pane.cpp:81:58: warning: 'gluErrorString' is deprecated: first deprecated in OS X 10.9 [-Wdeprecated-declarations]</div>
<div style="margin: 0px; font-size: 11px; line-height: normal; font-family: Menlo;" class="">
error (String ("OpenGL Error: ") + (const char*) gluErrorString (error_code));</div>
<div style="margin: 0px; font-size: 11px; line-height: normal; font-family: Menlo;" class="">
^</div>
<div style="margin: 0px; font-size: 11px; line-height: normal; font-family: Menlo;" class="">
/System/Library/Frameworks/OpenGL.framework/Headers/glu.h:260:24: note: 'gluErrorString' has been explicitly marked deprecated here</div>
<div style="margin: 0px; font-size: 11px; line-height: normal; font-family: Menlo;" class="">
extern const GLubyte * gluErrorString (GLenum error) OPENGL_DEPR</div>
</div>
<br class="">
<br class="">
<div class="">
<div style="color: rgb(0, 0, 0); letter-spacing: normal; orphans: auto; text-align: start; text-indent: 0px; text-transform: none; white-space: normal; widows: auto; word-spacing: 0px; -webkit-text-stroke-width: 0px; word-wrap: break-word; -webkit-nbsp-mode: space; -webkit-line-break: after-white-space;" class="">
<div class="">
<div style="word-wrap: break-word; -webkit-nbsp-mode: space; -webkit-line-break: after-white-space;" class="">
——————————————————<br class="">
Katherine Travis, PhD<br class="">
Instructor<br class="">
Stanford School of Medicine<br class="">
Department of Pediatrics<br class="">
1265 Welch Road MSOB X163</div>
<div style="word-wrap: break-word; -webkit-nbsp-mode: space; -webkit-line-break: after-white-space;" class="">
Stanford, CA 94035</div>
</div>
<div style="word-wrap: break-word; -webkit-nbsp-mode: space; -webkit-line-break: after-white-space;" class="">
T: 650-498-2576</div>
<div style="word-wrap: break-word; -webkit-nbsp-mode: space; -webkit-line-break: after-white-space;" class="">
Mail Code: 5208</div>
<div class=""><br class="">
</div>
</div>
<br class="Apple-interchange-newline">
<br class="Apple-interchange-newline">
</div>
<br class="">
</body>
</html>