<div dir="ltr"><div><div><div><div><div>Hi there,<br><br></div>If you download the <i>massive</i> MRtrix3 update that got pushed through about a day and a half ago, this can be done without modifying the script.<br></div>The script is now called <span style="font-family:monospace,monospace">5ttgen</span>, and this functionality can be accessed using the <span style="font-family:monospace,monospace">-nocrop</span> option.<br><br></div>Also: Questions regarding MRtrix3 are best posted on the new <a href="http://community.mrtrix.org/">community forum</a>; this mailing list will be maintained for questions about the older MRtrix version 0.2.<br><br></div>Best regards<br></div>Rob<br></div><div class="gmail_extra"><br clear="all"><div><div class="gmail_signature"><div dir="ltr"><div><div dir="ltr"><div><div dir="ltr"><div><div dir="ltr"><br>--<br><br><span style="color:rgb(255,102,0)"><b>Robert Smith, Ph.D</b><br>Senior Research Officer, Imaging Division</span><br><br>The Florey Institute of Neuroscience and Mental Health<br>Melbourne Brain Centre - Austin Campus<br>245 Burgundy Street<br>Heidelberg Vic 3084<br>Ph: +61 3 9035 7128<br>Fax: +61 3 9035 7301<br><a href="http://www.florey.edu.au/" target="_blank">www.florey.edu.au</a><br></div></div></div></div></div></div></div></div></div>
<br><div class="gmail_quote">On Mon, Mar 14, 2016 at 11:29 AM, Ping-Hong Yeh <span dir="ltr"><<a href="mailto:pinghongyeh@gmail.com" target="_blank">pinghongyeh@gmail.com</a>></span> wrote:<br><blockquote class="gmail_quote" style="margin:0 0 0 .8ex;border-left:1px #ccc solid;padding-left:1ex">
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<div dir="ltr">Hi Mrtrix community,
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<div> Is there a way to have the dimension and orientation of final output from act_anat_prepare_fsl the same as the input T1 file. </div>
<div>I have modified the script by skipping "mrcrop", but in vain to keep the orientation and dimension the same as the original one. </div>
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<div>Thanks. </div><span class="HOEnZb"><font color="#888888">
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<div>Ping</div>
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