<div dir="ltr">Hi Stella,<div><br></div><div>Could you please re-post your question over at the <a href="http://community.mrtrix.org/">MRtrix3 community discussion forum</a>? That's the best place for questions about MRtrix3; this mailing list is reserved for discussion relating to the older 0.2 version of the MRtrix software.</div><div><br></div><div>Thanks</div><div>Rob</div></div><div class="gmail_extra"><br clear="all"><div><div class="gmail_signature" data-smartmail="gmail_signature"><div dir="ltr"><div><div dir="ltr"><div><div dir="ltr"><div><div dir="ltr"><br>--<br><br><span style="color:rgb(255,102,0)"><b>Robert Smith, Ph.D</b><br>Senior Research Officer, Imaging Division</span><br><br>The Florey Institute of Neuroscience and Mental Health<br>Melbourne Brain Centre - Austin Campus<br>245 Burgundy Street<br>Heidelberg Vic 3084<br>Ph: +61 3 9035 7128<br>Fax: +61 3 9035 7301<br><a href="http://www.florey.edu.au/" target="_blank">www.florey.edu.au</a><br></div></div></div></div></div></div></div></div></div>
<br><div class="gmail_quote">On Wed, Jun 22, 2016 at 5:24 AM, stella maris sanchez <span dir="ltr"><<a href="mailto:stellamarissanchez89@gmail.com" target="_blank">stellamarissanchez89@gmail.com</a>></span> wrote:<br><blockquote class="gmail_quote" style="margin:0 0 0 .8ex;border-left:1px #ccc solid;padding-left:1ex">
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<div dir="ltr"><span style="font-size:12.8px">Dear MRTrix users,</span><br style="font-size:12.8px">
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<span style="font-size:12.8px">I'm new using MRTrix and I have some questions regarding the steps to perform an image of the parcellation nodes.</span><br style="font-size:12.8px">
<br style="font-size:12.8px">
<span style="font-size:12.8px">First I ran the commands labelconfig and labelsgmfix as it is said in the tutorial ( </span><a href="http://mrtrix.readthedocs.io/en/latest/tutorials/hcp_connectome.html#structural-image-processing" rel="noreferrer" style="font-size:12.8px" target="_blank">http://mrtrix.readthedocs.io/en/latest/tutorials/hcp_connectome.html#structural-image-processing</a><span style="font-size:12.8px"> )
but I cant see the output images. However, I can overlay the nodes obtained from the generic FreeSurfer's segmentation on the b_zero image of my data set and I find that they a few nodes are ploted out of the brain area.</span><br style="font-size:12.8px">
<span style="font-size:12.8px">How could I fix this issue?</span><br style="font-size:12.8px">
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<span style="font-size:12.8px">Cheers</span><br clear="all">
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<div data-smartmail="gmail_signature">Stella M.</div>
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