<div dir="ltr">Hi Shereif,<div><br></div><div>I've already answered your question on the MRtrix3 forum, but if you need more advice, please carry on the conversation here, since this is about the old version of MRtrix. </div><div><br></div><div>Just in case others are looking for my answer, it was:</div><div><br></div><div><p style="color:rgb(34,34,34);font-family:helvetica,arial,sans-serif;font-size:14px">I think it's just that the instructions aren't quite up to date with the version you downloaded. Have you tried:<br></p><p style="color:rgb(34,34,34);font-family:helvetica,arial,sans-serif;font-size:14px"></p><pre style="overflow:auto;font-family:consolas,menlo,monaco,"lucida console","liberation mono","dejavu sans mono","bitstream vera sans mono","courier new",monospace;font-size:14px;color:rgb(34,34,34)"><code class="inbox-inbox-hljs inbox-inbox-bash" style="font-family:consolas,menlo,monaco,"lucida console","liberation mono","dejavu sans mono","bitstream vera sans mono","courier new",monospace;font-size:1em;overflow:auto;color:rgb(51,51,51);background-image:initial;background-position:initial;background-size:initial;background-repeat:initial;background-origin:initial;background-clip:initial;background-color:rgb(248,248,248);word-wrap:normal;display:block;padding:0.5em;max-height:500px">$ <span class="inbox-inbox-hljs-built_in" style="color:rgb(0,134,179)">cd</span> mrtrix-0.2.12</code></pre>instead...?<br><br>Cheers,<br>Donald.</div></div><br><div class="gmail_quote"><div dir="ltr">On Wed, 22 Mar 2017 at 15:29 Luis Concha <<a href="mailto:lconcha@unam.mx">lconcha@unam.mx</a>> wrote:<br></div><blockquote class="gmail_quote" style="margin:0 0 0 .8ex;border-left:1px #ccc solid;padding-left:1ex"><div dir="ltr" class="gmail_msg">Hi Shereif.<div class="gmail_msg"><br class="gmail_msg"></div><div class="gmail_msg">Unless you have a very specific reason to stick to mrtrix version 2, I strongly suggest you install mrtrix3 available <a href="http://www.mrtrix.org/" class="gmail_msg" target="_blank">here</a>. Installation instructions are very clear and straightforward so you should not bump into any troubles.</div><div class="gmail_msg"><br class="gmail_msg"></div><div class="gmail_msg">Make sure you subscribe to the new mailing list, as this one is merely historical by now.</div><div class="gmail_msg"><br class="gmail_msg"></div><div class="gmail_msg">Cheers.</div></div><div class="gmail_extra gmail_msg"><br clear="all" class="gmail_msg"><div class="gmail_msg"><div class="m_199742467427794823gmail_signature gmail_msg" data-smartmail="gmail_signature"><div dir="ltr" class="gmail_msg">Dr. Luis Concha<br class="gmail_msg">Instituto de Neurobiología<br class="gmail_msg">Laboratorio C-13<br class="gmail_msg">UNAM, Campus Juriquilla<br class="gmail_msg">Boulervard Juriquilla 3001<br class="gmail_msg">Juriquilla, Querétaro.<br class="gmail_msg">C.P. 76230<br class="gmail_msg">México<br class="gmail_msg">Tel (442) 2 38 10 54<br class="gmail_msg">Fax (442) 2 38 10 46<br class="gmail_msg"><a href="http://personal.inb.unam.mx/lconcha/" class="gmail_msg" target="_blank">http://personal.inb.unam.mx/lconcha/</a><br class="gmail_msg"></div></div></div></div><div class="gmail_extra gmail_msg">
<br class="gmail_msg"><div class="gmail_quote gmail_msg">On Wed, Mar 22, 2017 at 8:34 AM, Haykal, S.A.M.M. <span dir="ltr" class="gmail_msg"><<a href="mailto:s.a.m.m.haykal@rug.nl" class="gmail_msg" target="_blank">s.a.m.m.haykal@rug.nl</a>></span> wrote:<br class="gmail_msg"><blockquote class="gmail_quote gmail_msg" style="margin:0 0 0 .8ex;border-left:1px #ccc solid;padding-left:1ex"><div dir="ltr" class="gmail_msg"><span style="font-size:12.800000190734863px" class="gmail_msg">Hello,</span><div style="font-size:12.800000190734863px" class="gmail_msg"><br class="gmail_msg"></div><div style="font-size:12.800000190734863px" class="gmail_msg">I'm trying to install MRtrix 0.2.12 on a macOS Sierra 10.12.3, but for some reason I can't manage to compile it. I installed both Xcode and Xquartz (the X11 substitute), and I successfully installed the dependencies using both Macports and Homebrew (on 2 separate occasions), but when try to compile it using:</div><div style="font-size:12.800000190734863px" class="gmail_msg"><pre style="white-space:pre-wrap;padding-left:1em;padding-top:0.5em;padding-bottom:0.5em;background-color:rgb(224,224,224);border:1px solid black;color:rgb(0,0,0)" class="gmail_msg">$ cd mrtrix-0.2.10
$ ./build</pre></div><div style="font-size:12.800000190734863px" class="gmail_msg"><br class="gmail_msg"></div><div style="font-size:12.800000190734863px" class="gmail_msg">I get the following error: </div><div style="font-size:12.800000190734863px" class="gmail_msg"><span style="color:rgb(0,0,0);font-family:menlo;font-size:11px" class="gmail_msg"><br class="gmail_msg"></span></div><div style="font-size:12.800000190734863px" class="gmail_msg"><span style="color:rgb(0,0,0);font-family:menlo;font-size:11px" class="gmail_msg">-bash: cd: mrtrix-0.2.10: No such file or directory</span></div><div style="font-size:12.800000190734863px" class="gmail_msg"><br class="gmail_msg"></div><div style="font-size:12.800000190734863px" class="gmail_msg">Same error with both methods. I can't even find a directory named "mrtrix-0.2.10", so I completely understand the error message.</div><div style="font-size:12.800000190734863px" class="gmail_msg"><br class="gmail_msg"></div><div style="font-size:12.800000190734863px" class="gmail_msg">What am I missing? I'm quite new to coding, so forgive me if my question is more on the novice side of things. I feel like the solution to my problem is really simple, but I just can't figure it out! I'd be very grateful if someone can help me out. Thanks!</div><div style="font-size:12.800000190734863px" class="gmail_msg"><br class="gmail_msg"></div><div style="font-size:12.800000190734863px" class="gmail_msg">Best,</div><div style="font-size:12.800000190734863px" class="gmail_msg">Shereif</div></div>
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</blockquote></div><div dir="ltr">-- <br></div><div data-smartmail="gmail_signature"><div dir="ltr"><div style="color:rgb(136,136,136);font-family:arial,sans-serif;font-size:12.8px"><div dir="ltr"><b><font color="#990000">Dr J-Donald Tournier (PhD)</font></b><br><div><font color="#990000"><br></font></div><i><font color="#990000">Senior Lecturer, </font></i><i><font color="#990000">Biomedical Engineering</font></i><div><i><font color="#990000">Division of Imaging Sciences & Biomedical Engineering<br>King's College London</font></i><div><i><font color="#990000"><br></font></i></div><div><i><font color="#990000"><b style="font-family:calibri,sans-serif;font-size:15px"><span style="font-size:10pt">A:</span></b><span style="font-family:calibri,sans-serif;font-size:10pt"> Department of Perinatal Imaging & Health, 1<sup>st</sup> Floor South Wing, St Thomas' Hospital, London. SE1 7EH</span><br></font></i></div><div><i><font color="#990000"><b>T:</b><span class="inbox-inbox-inbox-inbox-inbox-inbox-inbox-inbox-inbox-inbox-inbox-inbox-inbox-inbox-Apple-converted-space"> </span>+44 (0)20 7188 7118 ext 53613</font></i></div></div><div><i><font color="#990000"><b>W:</b> <a href="http://www.kcl.ac.uk/medicine/research/divisions/imaging/departments/biomedengineering" target="_blank" style="color:rgb(17,85,204)">http://www.kcl.ac.uk/medicine/research/divisions/imaging/departments/biomedengineering</a></font></i></div></div></div></div></div>