Copyright 1999-2000 VA Linux Systems, Inc.NITRC Community News
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NITRC Community Latest NewsNBS-Predict v1.0.0-beta.12 released
http://www.nitrc.org/forum/forum.php?forum_id=10034
We reintroduced leave-one-out cross-validation (LOOCV) to classification and fixed minor bugs in our GUI. Note that LOOCV is not available for regression. <br />
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Don't hesitate to try out our updated features and take your data analysis to the next level!NBS-Predict: A Prediction-based Extension of the Network-based StatisticEmin SerinThu, 04 Apr 2024 1:27:22 GMTSOBP BrainHack, May 7-8, 2024, Austin TX
http://www.nitrc.org/forum/forum.php?forum_id=10020
Going to Society of Biological Psychiatry (SOBP) annual meeting this May? Want more time to think? Want more time to code? Want more time to collaborate? The SOBP BrainHack is the place to be! May 7th&8th, 2024. <br />
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Details at https://www.repronim.org/SOBPHack-052024/; <br />
Registration at https://www.eventbrite.com/e/sobp-brain-hack-tickets-857174581247?aff=oddtdtcreator. <br />
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Space is limited, register soon!ReproNim: A Center for Reproducible Neuroimaging ComputationDavid KennedyTue, 26 Mar 2024 12:01:29 GMTNITRC 2.1.68 released
http://www.nitrc.org/forum/forum.php?forum_id=10029
We are pleased to announce the release of NITRC Version 2.1.68.<br />
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This release features the import of GitHub topics to NITRC tool categorizations. NITRC administrators are encouraged to link to GitHub projects, if applicable, to automatically update NITRC with GitHub project information and releases.<br />
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This release also includes a number of usability bug fixes.<br />
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Release notes can be found at https://www.nitrc.org/plugins/mwiki/index.php?title=nitrc:NITRC_Release_Notes#NITRC-R_Release_v2.1.68-0_-_03.2F06.2F2024<br />
NITRC CommunityNITRC ModeratorThu, 21 Mar 2024 4:13:05 GMTNeuroDOT Request for Feedback
http://www.nitrc.org/forum/forum.php?forum_id=10018
NeuroDOT is actively interested in obtaining community feedback engagement on our GitHub page (https://github.com/WUSTL-ORL/NeuroDOT), the openfNIRS forum (https://openfnirs.org/community/neurodot-forum/), and here on NITRC.<br />
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If you have any suggestions or questions regarding NeuroDOT, please submit your feedback through this Google Form: https://forms.gle/iEYfEZhfj99FVEs29<br />
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-Emma SpehNeuroDOTEmma SpehTue, 12 Mar 2024 3:44:33 GMTMarch Data Sharing and Reuse Seminar
http://www.nitrc.org/forum/forum.php?forum_id=10019
Join NIH Office of Data Science Strategy (ODSS) at the March Data Sharing and Reuse Seminar!<br />
Dr. Kilian Pohl will present "Accelerating Neuroscience Discovery Using Shared Software and Data" on March 8, 2024, at 12 p.m.<br />
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The monthly series highlights researchers who have taken existing data and found clever ways to reuse the data or generate new findings. A different NIH institute or center will also share its data science activities each month.<br />
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Event Date: Friday March 8, 2024, from 12-1 p.m.<br />
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Register at:<br />
https://datascience.nih.gov/content/march-data-sharing-and-reuse-seminarNITRC CommunityDavid KennedyFri, 08 Mar 2024 3:02:37 GMTNew GitHub Release: NeuroDOT v1.3
http://www.nitrc.org/forum/forum.php?forum_id=10017
Latest NeuroDOT release, v1.3, is now available from GitHub.<br />
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Changes since version 1.3 include:<br />
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1. Updates to Visualization functions:<br />
PlotCapData: updated source/detector spacing<br />
PlotMeshSurface: fixed facecolor parameter for case without data<br />
PlotSlices, PlotSlice, PlotSlicesTimeTrace: adjusted colorbar settings, added white background ‘bgW’ parameter<br />
Plot_RawData_Metrics_I_DQC: added params.LFO_GI to select which measurments to show in LFO plot<br />
Applycmap: compatibility with params.BG when all elements are equal to zero<br />
Adjust_brain_pos, PlotLRMeshes, PlotMeshSurface: added flat map ‘Fnodes’ case<br />
Plot_RawData_Cap_DQC, PlotCapPhysiologyPower: fixed SNR DQ metrics to compute based on the correct method<br />
DrawColoredSynchPoints: added colors to plot for up to 7 different pulses<br />
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2. Format Compatibility updates:<br />
Snirf2ndot & Nirs2ndot: enforce column organization of optode position arrays<br />
LoadVolumetricData, SaveVolumetricData, Nifti_4dfp: compatibility with volumetric data in sagittal and coronal orientations, compatibility with 4D data<br />
Updated all functions using info.pairs and info.MEAS to be compatible with tables<br />
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3. Other function updates:<br />
GLM_181206: Added R squared output<br />
Added ParcelBased_fc function<br />
Added Matrix_Org3 and freezeColors functions to Visualizations<br />
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4. Tutorial & Documentation updates:<br />
Light Modeling: updated all light modeling scripts to use makeAnirfaster, added tutorial for Light Modeling with a subset of measurements, and added tutorial for Light Modeling with a split-pad layout<br />
Loading Raw Data script and PowerPoint added for loading .snirf, .nirs, and .mat data<br />
Added Script_for_Viewing_Parcels for parcel-based functional-connectivity analysis<br />
Added NeuroDOT Tutorials ReadMe file<br />
Updated NeuroDOT Quick Start GuideNeuroDOTEmma SpehWed, 06 Mar 2024 2:36:49 GMTMIITRA labels are here!
http://www.nitrc.org/forum/forum.php?forum_id=10012
Version 3 of the MIITRA atlas is now available and contains labels! <br />
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Labels from a total of 30 labeling schemes / atlases are now available in MIITRA space (both in 1mm and 0.5mm resolution) e.g. AAL, Brodmann, Desikan-Killiany, von Economo, HCP, Julich, Shen, Yeo labels just to name a few. To generate them, labels from 30 different labeling schemes / atlases were applied to all 400 older adult participants of the MIITRA atlas in native space, then all labels were transformed to MIITRA space, and majority voting was used to generate the final labels in MIITRA space. The sets of labels made available in this version are based on structural, cytoarchitectonic, and functional connectivity information and substantially enhance the functionality of the MIITRA atlas. <br />
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In addition, the new version of the atlas includes gray matter masks and a new manual.MIITRA atlasKonstantinos ArfanakisWed, 21 Feb 2024 4:55:07 GMTOnline CONN 2024 workshop registration open
http://www.nitrc.org/forum/forum.php?forum_id=10015
We are pleased to announce that registration for the CONN 2024 functional connectivity workshop is now open. This workshop will take place ONLINE over ten consecutive Fridays with weekly 3-½ hour classes from 11am to 2:30pm EDT (UTC−04:00), starting on Friday April 5 and ending on Friday June 7 2024 (see https://courses.conn-toolbox.org/course-schedule for the course schedule details).<br />
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The CONN toolbox workshop offers intensive hands-on and highly interactive courses covering all aspects of functional connectivity analyses in CONN, and both beginners and advanced users are welcome. Classes take place over Zoom on Fridays for ten consecutive weeks. Zoom meetings of each class are recorded and made available to students to view at any time during the course. There are also practice homework assignments, and faculty is available during office-hour segments for additional student questions or support. <br />
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For additional information and registration see https://courses.conn-toolbox.org<br />
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Thank you for your support!<br />
Alfonso Nieto-CastanonCONN : functional connectivity toolboxAlfonso Nieto-CastanonTue, 13 Feb 2024 3:31:14 GMTICH_PHE_Segmentation Lite v1.0 released
http://www.nitrc.org/forum/forum.php?forum_id=9998
GUI and small model CNN for segmentationICH_PHE_SegmentationanhtrnTue, 06 Feb 2024 3:08:45 GMTReminder: ReproNim/INCF Fellowship program
http://www.nitrc.org/forum/forum.php?forum_id=10010
Time is running out. Apply now! Deadline is Jan 31.<br />
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The ReproNim/INCF Fellowship program is ready to select the fourth cadre of Fellows! Applications are now open here: https://docs.google.com/forms/d/e/1FAIpQ... We will award five to ten fellowships for this year; the total number of Fellows pending availability of funds. Mark your calendar for application submission starting January 1 through January 31, 2024. We will conduct a hybrid kickoff workshop held in conjunction with the OHBM BrainHack, typically preceding the OHBM annual conference which is scheduled for June 23-27, 2024 in Seoul, South Korea. Some travel assistance may be available to the Fellows.<br />
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For more information about the Fellowship program, here: https://www.repronim.org/fellowship. Note: Prior applicants who were not selected last year are welcome to re-apply!ReproNim: A Center for Reproducible Neuroimaging ComputationDavid KennedyMon, 29 Jan 2024 5:24:29 GMT