Copyright 1999-2000 VA Linux Systems, Inc. http://www.nitrc.org Spinal Cord Toolbox Latest News http://www.nitrc.org/forum/forum.php?forum_id=9096 Dear SCT users, <br /> <br /> We are happy to announce a new SCT release! <br /> https://github.com/neuropoly/spinalcordtoolbox/releases/tag/v4.0.0-beta.0 [1] <br /> <br /> This is a beta version for now, until we gather your feedback and fix a few remaining issues. <br /> <br /> Changes to release:<br /> https://github.com/neuropoly/spinalcordtoolbox/blob/release/CHANGES.md [2] <br /> <br /> Installation instruction:<br /> https://github.com/neuropoly/spinalcordtoolbox/blob/master/README.md#installation [3] <br /> <br /> If you have any question or feature request, please post on the forum:<br /> https://sourceforge.net/p/spinalcordtoolbox/discussion/help/ [4] <br /> <br /> Happy processing! <br /> <br /> The Spinal Cord Toolbox Team<br /> <br /> Links:<br /> ------<br /> [1] https://github.com/neuropoly/spinalcordtoolbox/releases/tag/v4.0.0-beta.0<br /> [2] https://github.com/neuropoly/spinalcordtoolbox/blob/release/CHANGES.md<br /> [3] https://github.com/neuropoly/spinalcordtoolbox/blob/master/README.md#installation<br /> [4] https://sourceforge.net/p/spinalcordtoolbox/discussion/help/<br /> Spinal Cord Toolbox NITRC ADMIN Tue, 22 Jan 2019 12:55:26 GMT http://www.nitrc.org/forum/forum.php?forum_id=9049 Dear SCT users, <br /> <br /> We are happy to announce a new SCT release! <br /> https://github.com/neuropoly/spinalcordtoolbox/releases/tag/v3.2.7 [1] <br /> <br /> Changes to release:<br /> https://github.com/neuropoly/spinalcordtoolbox/blob/release/CHANGES.md [2] <br /> <br /> Installation instruction:<br /> https://github.com/neuropoly/spinalcordtoolbox/blob/master/README.md#installation [3] <br /> <br /> If you have any question or feature request, please post on the forum:<br /> https://sourceforge.net/p/spinalcordtoolbox/discussion/help/ [4] <br /> <br /> Happy processing! <br /> <br /> The Spinal Cord Toolbox Team<br /> <br /> Links:<br /> ------<br /> [1] https://github.com/neuropoly/spinalcordtoolbox/releases/tag/v3.2.7<br /> [2] https://github.com/neuropoly/spinalcordtoolbox/blob/release/CHANGES.md<br /> [3] https://github.com/neuropoly/spinalcordtoolbox/blob/master/README.md#installation<br /> [4] https://sourceforge.net/p/spinalcordtoolbox/discussion/help/<br /> Spinal Cord Toolbox NITRC ADMIN Fri, 02 Nov 2018 7:21:01 GMT http://www.nitrc.org/forum/forum.php?forum_id=9039 <div class="markdown_content"><p>Hi JB,</p><br /> <p><code>sct_compute_snr</code> can be used to compute SNR. Various methods are available (diff, mult). You can also compute SNR per vertebral levels using the flag <code>-vert</code>.</p><br /> <p>Cheers,<br/><br /> Julien</p></div> Spinal Cord Toolbox NITRC ADMIN Wed, 17 Oct 2018 1:43:20 GMT http://www.nitrc.org/forum/forum.php?forum_id=9038 <div class="markdown_content"><p>Dear Dr Jullian,.<br/><br /> I would like to inqire about signalto noise ratio at each vertebral level. Is there any wany in the toolbox to measure SNR?</p><br /> <p>Thanks<br/><br /> JB</p></div> Spinal Cord Toolbox NITRC ADMIN Tue, 16 Oct 2018 11:33:17 GMT http://www.nitrc.org/forum/forum.php?forum_id=8560 <div class="markdown_content"><p>Hi John,</p><br /> <p>very sorry about the late response, but this forum is not used for help. Instead, please post your questions there: <a href="https://sourceforge.net/p/spinalcordtoolbox/discussion/help/">https://sourceforge.net/p/spinalcordtoolbox/discussion/help/</a></p><br /> <p>Yes, you can label manually using <code>sct_label_utils -create-viewer</code>. Kind regards,<br/><br /> Julien</p></div> Spinal Cord Toolbox NITRC ADMIN Fri, 04 May 2018 12:16:48 GMT http://www.nitrc.org/forum/forum.php?forum_id=8466 <div class="markdown_content"><p>Dear experts,<br/><br /> I would like to do labeling for the intervertebral levels like attached. Currently I am doing this manually. Is there any way to do this automatically in the spine toole box?</p><br /> <p><img alt="" rel="nofollow" src="http://"/></p><br /> <p>Thanks for any advice<br/><br /> John</p></div> Spinal Cord Toolbox NITRC ADMIN Mon, 02 Apr 2018 7:02:46 GMT http://www.nitrc.org/forum/forum.php?forum_id=8402 <div class="markdown_content"><p>Sorry for the simpilicit of the question. I setup envronment instead</p><br /> <p>setenv TMPDIR new path</p><br /> <p>Thank you very much</p></div> Spinal Cord Toolbox NITRC ADMIN Wed, 21 Mar 2018 9:20:33 GMT http://www.nitrc.org/forum/forum.php?forum_id=8403 <div class="markdown_content"><p>Dear SCT experts,<br/><br /> My question could be basics but I hipght aporciate your help. All the comamnds in SCT are writing temporary files to /tmp. How can I change that? In other words how can I change the default /tmp path to something else?</p><br /> <p>Thanks<br/><br /> John</p></div> Spinal Cord Toolbox NITRC ADMIN Wed, 21 Mar 2018 9:00:49 GMT http://www.nitrc.org/forum/forum.php?forum_id=8289 Dear SCT users, <br /> <br /> We are happy to announce a new release of the Spinal Cord Toolbox! The new 3.1.1 release can be downloaded here:<br /> https://github.com/neuropoly/spinalcordtoolbox/releases [1] <br /> <br /> Changes to release:<br /> https://github.com/neuropoly/spinalcordtoolbox/blob/release/CHANGES.md [2] <br /> <br /> This release introduces two new segmentation methods based on convolutional neural networks (deep-learning):<br /> - sct_deepseg_sc: automatic segmentation of the spinal cord<br /> - sct_deepseg_gm: automatic segmentation of the gray matter (more information: arxiv.org/abs/1710.01269) <br /> <br /> Installation instruction:<br /> https://sourceforge.net/p/spinalcordtoolbox/wiki/installation/ [3] <br /> <br /> If you have any question or feature request, please post on the forum:<br /> https://sourceforge.net/p/spinalcordtoolbox/discussion/help/ [4] <br /> <br /> Best,<br /> The Spinal Cord Toolbox Team<br /> <br /> Links:<br /> ------<br /> [1] https://github.com/neuropoly/spinalcordtoolbox/releases<br /> [2] https://github.com/neuropoly/spinalcordtoolbox/blob/release/CHANGES.md<br /> [3] https://sourceforge.net/p/spinalcordtoolbox/wiki/installation/<br /> [4] https://sourceforge.net/p/spinalcordtoolbox/discussion/help/<br /> Spinal Cord Toolbox NITRC ADMIN Mon, 26 Feb 2018 1:16:18 GMT http://www.nitrc.org/forum/forum.php?forum_id=8302 <div class="markdown_content"><p>Hi, <br/><br /> Did this course already happened this year?</p><br /> <p>Best regards,<br/><br /> Carolina Machado</p></div> Spinal Cord Toolbox NITRC ADMIN Tue, 20 Feb 2018 10:48:50 GMT