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  <copyright>Copyright 1999-2000 VA Linux Systems, Inc.</copyright>
  <title>Spinal Cord Toolbox News</title>
  <link>http://www.nitrc.org</link>
  <description>Spinal Cord Toolbox Latest News</description>
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 <item rdf:about="http://www.nitrc.org/forum/forum.php?forum_id=9096">
   <title>New release: v4.0.0-beta.0</title>
   <link>http://www.nitrc.org/forum/forum.php?forum_id=9096</link>
   <description>Dear SCT users, &lt;br /&gt;
&lt;br /&gt;
We are happy to announce a new SCT release! &lt;br /&gt;
 https://github.com/neuropoly/spinalcordtoolbox/releases/tag/v4.0.0-beta.0 [1] &lt;br /&gt;
&lt;br /&gt;
This is a beta version for now, until we gather your feedback and fix a few remaining issues. &lt;br /&gt;
&lt;br /&gt;
Changes to release:&lt;br /&gt;
 https://github.com/neuropoly/spinalcordtoolbox/blob/release/CHANGES.md [2] &lt;br /&gt;
&lt;br /&gt;
Installation instruction:&lt;br /&gt;
 https://github.com/neuropoly/spinalcordtoolbox/blob/master/README.md#installation [3] &lt;br /&gt;
&lt;br /&gt;
If you have any question or feature request, please post on the forum:&lt;br /&gt;
 https://sourceforge.net/p/spinalcordtoolbox/discussion/help/ [4] &lt;br /&gt;
&lt;br /&gt;
Happy processing! &lt;br /&gt;
&lt;br /&gt;
The Spinal Cord Toolbox Team&lt;br /&gt;
&lt;br /&gt;
Links:&lt;br /&gt;
------&lt;br /&gt;
[1] https://github.com/neuropoly/spinalcordtoolbox/releases/tag/v4.0.0-beta.0&lt;br /&gt;
[2] https://github.com/neuropoly/spinalcordtoolbox/blob/release/CHANGES.md&lt;br /&gt;
[3] https://github.com/neuropoly/spinalcordtoolbox/blob/master/README.md#installation&lt;br /&gt;
[4] https://sourceforge.net/p/spinalcordtoolbox/discussion/help/&lt;br /&gt;
</description>
   <dc:subject>Spinal Cord Toolbox</dc:subject>
   <dc:creator>NITRC ADMIN</dc:creator>
  <dc:date>Tue, 22 Jan 2019 12:55:26 GMT</dc:date>
  </item>

 <item rdf:about="http://www.nitrc.org/forum/forum.php?forum_id=9049">
   <title>New release: v3.2.7</title>
   <link>http://www.nitrc.org/forum/forum.php?forum_id=9049</link>
   <description>Dear SCT users, &lt;br /&gt;
&lt;br /&gt;
We are happy to announce a new SCT release! &lt;br /&gt;
 https://github.com/neuropoly/spinalcordtoolbox/releases/tag/v3.2.7 [1] &lt;br /&gt;
&lt;br /&gt;
Changes to release:&lt;br /&gt;
 https://github.com/neuropoly/spinalcordtoolbox/blob/release/CHANGES.md [2] &lt;br /&gt;
&lt;br /&gt;
Installation instruction:&lt;br /&gt;
 https://github.com/neuropoly/spinalcordtoolbox/blob/master/README.md#installation [3] &lt;br /&gt;
&lt;br /&gt;
If you have any question or feature request, please post on the forum:&lt;br /&gt;
 https://sourceforge.net/p/spinalcordtoolbox/discussion/help/ [4] &lt;br /&gt;
&lt;br /&gt;
Happy processing! &lt;br /&gt;
&lt;br /&gt;
The Spinal Cord Toolbox Team&lt;br /&gt;
&lt;br /&gt;
Links:&lt;br /&gt;
------&lt;br /&gt;
[1] https://github.com/neuropoly/spinalcordtoolbox/releases/tag/v3.2.7&lt;br /&gt;
[2] https://github.com/neuropoly/spinalcordtoolbox/blob/release/CHANGES.md&lt;br /&gt;
[3] https://github.com/neuropoly/spinalcordtoolbox/blob/master/README.md#installation&lt;br /&gt;
[4] https://sourceforge.net/p/spinalcordtoolbox/discussion/help/&lt;br /&gt;
</description>
   <dc:subject>Spinal Cord Toolbox</dc:subject>
   <dc:creator>NITRC ADMIN</dc:creator>
  <dc:date>Fri, 02 Nov 2018 7:21:01 GMT</dc:date>
  </item>

 <item rdf:about="http://www.nitrc.org/forum/forum.php?forum_id=9039">
   <title>signal to noise ratio</title>
   <link>http://www.nitrc.org/forum/forum.php?forum_id=9039</link>
   <description>&lt;div class=&quot;markdown_content&quot;&gt;&lt;p&gt;Hi JB,&lt;/p&gt;&lt;br /&gt;
&lt;p&gt;&lt;code&gt;sct_compute_snr&lt;/code&gt; can be used to compute SNR. Various methods are available (diff, mult). You can also compute SNR per vertebral levels using the flag &lt;code&gt;-vert&lt;/code&gt;.&lt;/p&gt;&lt;br /&gt;
&lt;p&gt;Cheers,&lt;br/&gt;&lt;br /&gt;
Julien&lt;/p&gt;&lt;/div&gt;</description>
   <dc:subject>Spinal Cord Toolbox</dc:subject>
   <dc:creator>NITRC ADMIN</dc:creator>
  <dc:date>Wed, 17 Oct 2018 1:43:20 GMT</dc:date>
  </item>

 <item rdf:about="http://www.nitrc.org/forum/forum.php?forum_id=9038">
   <title>signal to noise ratio</title>
   <link>http://www.nitrc.org/forum/forum.php?forum_id=9038</link>
   <description>&lt;div class=&quot;markdown_content&quot;&gt;&lt;p&gt;Dear Dr Jullian,.&lt;br/&gt;&lt;br /&gt;
I would like to inqire about signalto noise ratio at each  vertebral level. Is there any wany in the toolbox to measure SNR?&lt;/p&gt;&lt;br /&gt;
&lt;p&gt;Thanks&lt;br/&gt;&lt;br /&gt;
JB&lt;/p&gt;&lt;/div&gt;</description>
   <dc:subject>Spinal Cord Toolbox</dc:subject>
   <dc:creator>NITRC ADMIN</dc:creator>
  <dc:date>Tue, 16 Oct 2018 11:33:17 GMT</dc:date>
  </item>

 <item rdf:about="http://www.nitrc.org/forum/forum.php?forum_id=8560">
   <title>Labeling for the intervertebral levels</title>
   <link>http://www.nitrc.org/forum/forum.php?forum_id=8560</link>
   <description>&lt;div class=&quot;markdown_content&quot;&gt;&lt;p&gt;Hi John,&lt;/p&gt;&lt;br /&gt;
&lt;p&gt;very sorry about the late response, but this forum is not used for help. Instead, please post your questions there: &lt;a href=&quot;https://sourceforge.net/p/spinalcordtoolbox/discussion/help/&quot;&gt;https://sourceforge.net/p/spinalcordtoolbox/discussion/help/&lt;/a&gt;&lt;/p&gt;&lt;br /&gt;
&lt;p&gt;Yes, you can label manually using &lt;code&gt;sct_label_utils -create-viewer&lt;/code&gt;. Kind regards,&lt;br/&gt;&lt;br /&gt;
Julien&lt;/p&gt;&lt;/div&gt;</description>
   <dc:subject>Spinal Cord Toolbox</dc:subject>
   <dc:creator>NITRC ADMIN</dc:creator>
  <dc:date>Fri, 04 May 2018 12:16:48 GMT</dc:date>
  </item>

 <item rdf:about="http://www.nitrc.org/forum/forum.php?forum_id=8466">
   <title>Labeling for the intervertebral levels</title>
   <link>http://www.nitrc.org/forum/forum.php?forum_id=8466</link>
   <description>&lt;div class=&quot;markdown_content&quot;&gt;&lt;p&gt;Dear experts,&lt;br/&gt;&lt;br /&gt;
I would like to do labeling for the intervertebral levels like attached. Currently I am doing this manually. Is there any way to do this automatically in the spine toole box?&lt;/p&gt;&lt;br /&gt;
&lt;p&gt;&lt;img alt=&quot;&quot; rel=&quot;nofollow&quot; src=&quot;http://&quot;/&gt;&lt;/p&gt;&lt;br /&gt;
&lt;p&gt;Thanks for any advice&lt;br/&gt;&lt;br /&gt;
John&lt;/p&gt;&lt;/div&gt;</description>
   <dc:subject>Spinal Cord Toolbox</dc:subject>
   <dc:creator>NITRC ADMIN</dc:creator>
  <dc:date>Mon, 02 Apr 2018 7:02:46 GMT</dc:date>
  </item>

 <item rdf:about="http://www.nitrc.org/forum/forum.php?forum_id=8402">
   <title>Change /temp path</title>
   <link>http://www.nitrc.org/forum/forum.php?forum_id=8402</link>
   <description>&lt;div class=&quot;markdown_content&quot;&gt;&lt;p&gt;Sorry for the simpilicit of the question. I setup envronment instead&lt;/p&gt;&lt;br /&gt;
&lt;p&gt;setenv TMPDIR new path&lt;/p&gt;&lt;br /&gt;
&lt;p&gt;Thank you very much&lt;/p&gt;&lt;/div&gt;</description>
   <dc:subject>Spinal Cord Toolbox</dc:subject>
   <dc:creator>NITRC ADMIN</dc:creator>
  <dc:date>Wed, 21 Mar 2018 9:20:33 GMT</dc:date>
  </item>

 <item rdf:about="http://www.nitrc.org/forum/forum.php?forum_id=8403">
   <title>Change /temp path</title>
   <link>http://www.nitrc.org/forum/forum.php?forum_id=8403</link>
   <description>&lt;div class=&quot;markdown_content&quot;&gt;&lt;p&gt;Dear SCT experts,&lt;br/&gt;&lt;br /&gt;
My question could be basics but I hipght aporciate your help. All the comamnds in SCT are writing temporary files to /tmp. How can I change that? In other words how can I change the default /tmp path to something else?&lt;/p&gt;&lt;br /&gt;
&lt;p&gt;Thanks&lt;br/&gt;&lt;br /&gt;
John&lt;/p&gt;&lt;/div&gt;</description>
   <dc:subject>Spinal Cord Toolbox</dc:subject>
   <dc:creator>NITRC ADMIN</dc:creator>
  <dc:date>Wed, 21 Mar 2018 9:00:49 GMT</dc:date>
  </item>

 <item rdf:about="http://www.nitrc.org/forum/forum.php?forum_id=8289">
   <title>New release: v3.1.1</title>
   <link>http://www.nitrc.org/forum/forum.php?forum_id=8289</link>
   <description>Dear SCT users, &lt;br /&gt;
&lt;br /&gt;
We are happy to announce a new release of the Spinal Cord Toolbox! The new 3.1.1 release can be downloaded here:&lt;br /&gt;
 https://github.com/neuropoly/spinalcordtoolbox/releases [1] &lt;br /&gt;
&lt;br /&gt;
Changes to release:&lt;br /&gt;
 https://github.com/neuropoly/spinalcordtoolbox/blob/release/CHANGES.md [2] &lt;br /&gt;
&lt;br /&gt;
This release introduces two new segmentation methods based on convolutional neural networks (deep-learning):&lt;br /&gt;
 - sct_deepseg_sc: automatic segmentation of the spinal cord&lt;br /&gt;
 - sct_deepseg_gm: automatic segmentation of the gray matter (more information: arxiv.org/abs/1710.01269) &lt;br /&gt;
&lt;br /&gt;
Installation instruction:&lt;br /&gt;
 https://sourceforge.net/p/spinalcordtoolbox/wiki/installation/ [3] &lt;br /&gt;
&lt;br /&gt;
If you have any question or feature request, please post on the forum:&lt;br /&gt;
 https://sourceforge.net/p/spinalcordtoolbox/discussion/help/ [4] &lt;br /&gt;
&lt;br /&gt;
Best,&lt;br /&gt;
 The Spinal Cord Toolbox Team&lt;br /&gt;
&lt;br /&gt;
Links:&lt;br /&gt;
------&lt;br /&gt;
[1] https://github.com/neuropoly/spinalcordtoolbox/releases&lt;br /&gt;
[2] https://github.com/neuropoly/spinalcordtoolbox/blob/release/CHANGES.md&lt;br /&gt;
[3] https://sourceforge.net/p/spinalcordtoolbox/wiki/installation/&lt;br /&gt;
[4] https://sourceforge.net/p/spinalcordtoolbox/discussion/help/&lt;br /&gt;
</description>
   <dc:subject>Spinal Cord Toolbox</dc:subject>
   <dc:creator>NITRC ADMIN</dc:creator>
  <dc:date>Mon, 26 Feb 2018 1:16:18 GMT</dc:date>
  </item>

 <item rdf:about="http://www.nitrc.org/forum/forum.php?forum_id=8302">
   <title>SCT course</title>
   <link>http://www.nitrc.org/forum/forum.php?forum_id=8302</link>
   <description>&lt;div class=&quot;markdown_content&quot;&gt;&lt;p&gt;Hi, &lt;br/&gt;&lt;br /&gt;
Did this course already happened this year?&lt;/p&gt;&lt;br /&gt;
&lt;p&gt;Best regards,&lt;br/&gt;&lt;br /&gt;
Carolina Machado&lt;/p&gt;&lt;/div&gt;</description>
   <dc:subject>Spinal Cord Toolbox</dc:subject>
   <dc:creator>NITRC ADMIN</dc:creator>
  <dc:date>Tue, 20 Feb 2018 10:48:50 GMT</dc:date>
  </item>
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