dinos@Spartan:~/src/BRAINS/BRAINSStandAlone-build$ make -- SuperBuild - BRAINSTools => Requires ITKv4, SlicerExecutionModel, ReferenceAtlas, VTK, -- SuperBuild - ITKv4[OK] -- SuperBuild - SlicerExecutionModel => Requires ITKv4[INCLUDED], -- SuperBuild - SlicerExecutionModel[OK] -- SuperBuild - ReferenceAtlas[OK] -- SuperBuild - VTK[OK] -- SuperBuild - BRAINSTools[OK] -- Configuring done -- Generating done -- Build files have been written to: /home/dinos/src/brainsmush/BRAINSStandAlone-build [ 19%] Built target ITKv4 [ 39%] Built target SlicerExecutionModel [ 58%] Built target ReferenceAtlas [ 78%] Built target VTK [ 78%] Performing forcebuild step for 'BRAINSTools' [ 78%] Performing build step for 'BRAINSTools' [ 1%] Built target BRAINSCommonLib [ 1%] Built target BRAINSCleanMask [ 1%] Built target PrettyPrintTableTest [ 1%] Built target BRAINSFitLib [ 1%] Built target BRAINSFit [ 2%] Built target BRAINSFitEZLib [ 2%] Built target BRAINSFitEZ [ 2%] Built target BRAINSFitEZTestDriver [ 16%] Built target BRAINSFitFetchData [ 17%] Built target BRAINSFitTestDriver [ 17%] Built target CenterOfROIInitTest [ 17%] Built target BRAINSResampleLib [ 17%] Built target BRAINSResample [ 17%] Built target BRAINSResizeLib [ 17%] Built target BRAINSResize [ 21%] Built target BRAINSResampleFetchData [ 22%] Built target BRAINSResampleTestDriver [ 23%] Built target BRAINSROIAutoLib [ 23%] Built target BRAINSROIAuto [ 23%] Built target BRAINSROIAutoFetchData [ 23%] Built target BRAINSROIAutoTestDriver [ 25%] Built target GTRACTCommon [ 25%] Built target compareTractInclusionLib [ 25%] Built target compareTractInclusion [ 26%] Built target extractNrrdVectorIndexLib [ 26%] Built target extractNrrdVectorIndex [ 26%] Built target gtractAnisotropyMapLib [ 26%] Built target gtractAnisotropyMap [ 27%] Built target gtractAverageBvaluesLib [ 27%] Built target gtractAverageBvalues [ 27%] Built target gtractClipAnisotropyLib [ 27%] Built target gtractClipAnisotropy [ 27%] Built target gtractCoRegAnatomyLib [ 28%] Built target gtractCoRegAnatomy [ 29%] Built target gtractConcatDwiLib [ 29%] Built target gtractConcatDwi [ 29%] Built target gtractCopyImageOrientationLib [ 29%] Built target gtractCopyImageOrientation [ 30%] Built target gtractCoregBvaluesLib [ 30%] Built target gtractCoregBvalues [ 30%] Built target gtractCostFastMarchingLib [ 30%] Built target gtractCostFastMarching [ 30%] Built target gtractCreateGuideFiberLib [ 31%] Built target gtractCreateGuideFiber [ 32%] Built target gtractFastMarchingTrackingLib [ 32%] Built target gtractFastMarchingTracking [ 32%] Built target gtractFiberTrackingLib [ 32%] Built target gtractFiberTracking [ 32%] Built target gtractImageConformityLib [ 33%] Built target gtractImageConformity [ 34%] Built target gtractInvertBSplineTransformLib [ 34%] Built target gtractInvertBSplineTransform [ 34%] Built target gtractInvertDisplacementFieldLib [ 34%] Built target gtractInvertDisplacementField [ 35%] Built target gtractInvertRigidTransformLib [ 35%] Built target gtractInvertRigidTransform [ 35%] Built target gtractResampleAnisotropyLib [ 35%] Built target gtractResampleAnisotropy [ 35%] Built target gtractResampleB0Lib [ 36%] Built target gtractResampleB0 [ 37%] Built target gtractResampleCodeImageLib [ 37%] Built target gtractResampleCodeImage [ 37%] Built target gtractResampleDWIInPlaceLib [ 37%] Built target gtractResampleDWIInPlace [ 37%] Built target gtractResampleFibersLib [ 38%] Built target gtractResampleFibers [ 39%] Built target gtractTensorLib [ 39%] Built target gtractTensor [ 39%] Built target gtractTransformToDisplacementFieldLib [ 39%] Built target gtractTransformToDisplacementField [ 39%] Built target BRAINSLandmarkInitializerLib [ 40%] Built target BRAINSLandmarkInitializer [ 43%] Built target BRAINSDemonWarpTemplatesLIB [ 43%] Built target BRAINSDemonWarpLib [ 43%] Built target BRAINSDemonWarp [ 44%] Built target VBRAINSDemonWarpLib [ 44%] Built target VBRAINSDemonWarp [ 50%] Built target BRAINSDemonWarpFetchData [ 51%] Built target BRAINSDemonWarpTestDriver [ 51%] Built target VBRAINSDemonWarpTestDriver [ 52%] Built target BRAINSSurfaceFlatteningLib [ 53%] Built target BRAINSSurfaceFlattening [ 53%] Built target BRAINSSurfaceFlatteningFetchData [ 54%] Built target BRAINSApplySurfaceLabelsLib [ 54%] Built target BRAINSApplySurfaceLabels [ 55%] Built target BRAINSApplySurfaceLabelsFetchData [ 55%] Built target BRAINSMeasureSurfaceLib [ 56%] Built target BRAINSMeasureSurface [ 57%] Built target BRAINSSurfaceGenerationLib [ 57%] Built target BRAINSSurfaceGeneration [ 58%] Built target CompareSurfacesLib [ 58%] Built target CompareSurfaces [ 58%] Built target MultiResolutionRegistrationLib [ 58%] Built target MultiResolutionRegistration [ 58%] Built target AssignArrayLib [ 58%] Built target AssignArray [ 59%] Built target AverageScalarsByResamplingLib [ 59%] Built target AverageScalarsByResampling [ 59%] Built target CombineLabelsLib [ 60%] Built target CombineLabels [ 61%] Built target QuadEdgeMeshClampScalarsLib [ 61%] Built target QuadEdgeMeshClampScalars [ 61%] Built target QuadEdgeMeshHistogramMatchingLib [ 61%] Built target QuadEdgeMeshHistogramMatching [ 62%] Built target QuadEdgeMeshPiecewiseRescaleLib [ 62%] Built target QuadEdgeMeshPiecewiseRescale [ 62%] Built target SmoothingMeshScalarsLib [ 62%] Built target SmoothingMeshScalars [ 63%] Built target IcosahedronResamplerLib [ 63%] Built target IcosahedronResampler [ 64%] Built target LabelMapsLib [ 64%] Built target LabelMaps [ 65%] Built target SurfaceColorLib [ 65%] Built target SurfaceColor [ 66%] Built target RemoveTinyLabelsLib [ 66%] Built target RemoveTinyLabels [ 66%] Built target RearrangeSurfaceLabelsLib [ 67%] Built target RearrangeSurfaceLabels [ 68%] Built target SurfaceLabelCleanUpLib [ 68%] Built target SurfaceLabelCleanUp [ 69%] Built target WarpQuadEdgeMeshLib [ 69%] Built target WarpQuadEdgeMesh [ 69%] Built target ProbabilityLabelsLib [ 70%] Built target ProbabilityLabels [ 71%] Built target ResampleQuadEdgeMeshLib [ 71%] Built target ResampleQuadEdgeMesh [ 71%] Built target QuadEdgeMeshSimilarityLib [ 71%] Built target QuadEdgeMeshSimilarity [ 72%] Built target landmarksConstellationCOMMONLIB [ 72%] Built target BRAINSAlignMSPLib [ 72%] Built target BRAINSAlignMSP [ 72%] Built target BRAINSClipInferiorLib [ 72%] Built target BRAINSClipInferior [ 73%] Built target BRAINSConstellationDetectorLib [ 73%] Built target BRAINSConstellationDetector [ 74%] Built target BRAINSConstellationModelerLib [ 74%] Built target BRAINSConstellationModeler [ 74%] Built target BRAINSEyeDetectorLib [ 74%] Built target BRAINSEyeDetector [ 75%] Built target BRAINSLinearModelerEPCALib [ 75%] Built target BRAINSLinearModelerEPCA [ 75%] Built target BRAINSLmkTransformLib [ 75%] Built target BRAINSLmkTransform [ 75%] Built target BRAINSTransformFromFiducialsLib [ 76%] Built target BRAINSTransformFromFiducials [ 77%] Built target BRAINSTrimForegroundInDirectionLib [ 77%] Built target BRAINSTrimForegroundInDirection [ 78%] Built target fcsv_to_hdf5Lib [ 78%] Built target fcsv_to_hdf5 [ 79%] Built target insertMidACPCpointLib [ 79%] Built target insertMidACPCpoint [ 80%] Built target landmarksConstellationAlignerLib [ 80%] Built target landmarksConstellationAligner [ 80%] Built target landmarksConstellationWeightsLib [ 81%] Built target landmarksConstellationWeights [ 82%] Built target GenerateAverageLmkFile [ 83%] Built target LmkStatistics [ 84%] Built target BRAINSAlignMSPTestDriver [ 85%] Built target BRAINSClipInferiorTestDriver [ 85%] Built target BRAINSConstellationDetectorTestDriver [ 94%] Built target BRAINSConstellationDetectorToolFetchData [ 94%] Built target BRAINSConstellationModelerTestDriver [ 95%] Built target BRAINSEyeDetectorTestDriver [ 95%] Built target BRAINSTrimForegroundInDirectionTestDriver [ 95%] Built target LandmarksCompareLib [ 95%] Built target LandmarksCompare [ 95%] Built target TestlandmarksConstellationTrainingDefinitionIO [ 95%] Built target insertMidACPCpointTestDriver [ 95%] Built target landmarksConstellationAlignerTestDriver [ 96%] Built target landmarksConstellationWeightsTestDriver [ 97%] Built target BRAINSABCCOMMONLIB [ 97%] Built target BRAINSABCLib [ 97%] Built target BRAINSABC [ 97%] Built target ESLRLib [ 97%] Built target ESLR [ 97%] Built target GenerateLabelMapFromProbabilityMapLib [ 97%] Built target GenerateLabelMapFromProbabilityMap [ 98%] Built target BRAINSABCFetchData [ 99%] Built target BRAINSABCTestDriver [100%] Built target BRAINSMushLib [100%] Built target BRAINSMush [100%] Built target BRAINSInitializedControlPointsLib [100%] Built target BRAINSInitializedControlPoints [100%] Built target BRAINSTransformConvertLib [100%] Built target BRAINSTransformConvert [100%] Built target BRAINSTransformConvertMakeTestFiles [100%] Built target ImageCompare [ 78%] No install step for 'BRAINSTools' [ 78%] Completed 'BRAINSTools' [100%] Built target BRAINSTools