------------------------------------------------------------------------ CAT12.8.2 r2170: 1/1: .\SOLO_NFL\dbm\T1_concussion\1002.nii ------------------------------------------------------------------------ SANLM denoising (medium) 34s APP: Rough bias correction Initialize 6s Estimate background 4s Initial correction 6s Refine background 4s Final correction 5s Final scaling 6s 34s Correct center-of-mass 5s Affine registration 10s SPM preprocessing 1 (estimate 1 - TPM registration): 51s SPM preprocessing 1 (estimate 2): 62s SPM preprocessing 2 (write) Write Segmentation 18s Update Segmentation 14s Update Skull-Stripping 20s Update probability maps 5s 57s Global intensity correction 8s SANLM denoising after intensity normalization (medium) 7s Fast Optimized Shooting registration 30s Local adaptive segmentation (LASstr=0.50) Prepare maps 2s Prepare partitions 1s Prepare segments (LASmod = 1.00) 6s Estimate local tissue thresholds (WM) 10s Estimate local tissue thresholds (GM) 13s Intensity transformation 0s SANLM denoising after LAS (medium) 17s 52s ROI segmentation (partitioning) Atlas -> subject space 5s Major structures 2s Ventricle detection 7s Blood vessel detection 6s WMH detection (WMHCstr=0.50 > WMHCstr'=0.23) 13s Manual stroke lesion detection 0s Closing of deep structures 1s Side alignment 2s Final corrections 2s 38s Blood vessel correction (BVCstr=0.50) 0s Amap using initial SPM12 segmentations (MRF filter strength 0.06) 54s AMAP peaks: [CSF,GM,WM] = [0.36±0.07,0.68±0.08,0.98±0.05] Final cleanup (gcutstr=0.25) Level 1 cleanup (ROI estimation) 2s Level 1 cleanup (brain masking) 2s Level 2 cleanup (CSF correction) 1s Level 3 cleanup (CSF/WM PVE) 1s 5s Optimized Shooting registration with 2.50:-0.25:1.50 mm (regstr=0.50) Template: "C:\Indi\programas\toolboxes\spm12\toolbox\cat12\templates_MNI152NLin2009cAsym\Template_0_GS.nii" 1 | 2.50 | 0.0885 0.0000 0.0885 | 32.0000 2 | 2.50 | 0.0858 0.0012 0.0870 | 29.4886 3 | 2.50 | 0.0849 0.0019 0.0868 | 26.9772 4 | 2.50 | 0.0844 0.0022 0.0866 | 24.6107 5 | 2.50 | 0.0841 0.0023 0.0864 | 22.6548 6 | 2.50 | 0.0838 0.0024 0.0862 | 20.6989 7 | 2.50 | 0.0835 0.0025 0.0860 | 18.9688 8 | 2.50 | 0.0831 0.0027 0.0858 | 17.4455 9 | 2.50 | 0.0828 0.0028 0.0855 | 15.9223 10 | 2.50 | 0.0824 0.0029 0.0853 | 14.6627 11 | 2.50 | 0.0821 0.0030 0.0850 | 13.4764 12 | 2.50 | 0.0817 0.0031 0.0847 | 12.3015 13 | 2.50 | 0.0813 0.0032 0.0845 | 11.3776 14 | 2.50 | 0.0809 0.0033 0.0842 | 10.4537 15 | 2.25 | 0.0799 0.0034 0.0833 | 9.5920 16 | 2.25 | 0.0769 0.0049 0.0818 | 8.8725 17 | 2.25 | 0.0757 0.0054 0.0811 | 8.1530 18 | 2.25 | 0.0749 0.0057 0.0805 | 7.5234 29 | 2.00 | 0.0762 0.0027 0.0790 | 3.3283 30 | 2.00 | 0.0707 0.0051 0.0758 | 3.1221 31 | 2.00 | 0.0688 0.0061 0.0749 | 2.9160 43 | 1.75 | 0.0677 0.0035 0.0712 | 1.5785 44 | 1.75 | 0.0634 0.0058 0.0692 | 1.5194 45 | 1.75 | 0.0619 0.0067 0.0686 | 1.4626 57 | 1.50 | 0.0602 0.0049 0.0651 | 1.0900 58 | 1.50 | 0.0570 0.0070 0.0640 | 1.0730 59 | 1.50 | 0.0559 0.0077 0.0636 | 1.0579 Shooting registration with 2.50:-0.25:1.50 mm takes 114s Prepare output 11s 125s Jacobian determinant (RMS): 0.130168 Template Matching: 0.167779 Write result maps 9s Surface and thickness estimation lh: Thickness estimation (0.50 mm³) WM distance: 41s CSF distance: 10s PBT2x thickness: 29s 84s Create initial surface [Warning: Escaped character '\I' is not valid. See 'doc sprintf' for supported special characters.] [> In cat_io_cprintf (line 335) In cat_run_newcatch (line 57) In cat_run>run_job (line 1170) In cat_run (line 706) In cfg_run_cm (line 29) In cfg_util>local_runcj (line 1688) In cfg_util (line 959) In cfg_ui>MenuFileRun_Callback (line 703) In gui_mainfcn (line 95) In cfg_ui (line 53)] ------------------------------------------------------------------------ CAT Preprocessing error for 1002: ------------------------------------------------------------------------ Surface file C: 1887 - loadSurf 1034 - cat_surf_createCS2 794 - cat_main1639 1269 - cat_run_job1639 40 - cat_run_newcatch 1170 - run_job 706 - cat_run 29 - cfg_run_cm 1688 - local_runcj 959 - cfg_util 703 - MenuFileRun_Callback 95 - gui_mainfcn 53 - cfg_ui ------------------------------------------------------------------------