Hi,
I also did a VBM analysis on GM images and I have a question If you are kindly enough to respond. Have you noticed that the resulted image from the GLM analysis (a 2-sample T test) is orientated different from the orientation of the preprocessed images? Do you know how come is that? In the first step, the preprocessing, the images are orientated the same as in the aquisition process, but in final after the GLM analyses, are re-orientated as in FSL. If I overlay the Avg152T1 template over the results the orientation is still different from the initial one, even though at the beginning the template was orientated the same as a the aquisition. The images were converted with spm so is all from the program.

Please help and reply!
Thank you!

Kindly regards,
Ana