[Brains-users] Tissue Classification

[Tor Ivar Hansen]

Dear fellow BRAINS users,

I've been trying to do a multimodal tissue classification in BRAINS using a
T1 and T2 image as inputs and have run into some challenges.

1. Is it possible to run  BRAINSClassPlugs only with T1 and T2 image inputs?
   -At the moment I have to enter a PD volume and something for Venous
Blood Plugs or else the procedure will fail. I do not have a PD volume and
have yet to figure out how to make VB plugs.

2. How does the --ignore_rest option work?
   -Can I use this some how to make a script run without having to enter
all the volumes it asks for?

I have been looking in the documentation but have failed to find any
answers yet. Hopefully some of you know this.

Best regards,
Tor Ivar Hansen

PhD-Candidate
Department of Neuroscience,
NTNU
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