[Camino-users] Connectivity Mapping with Camino

[Gavin Winston]

Ian Malone wrote:
> Hi,
> 
> Two people asking about this on the same day? I came up with a patch for 
> it recently, but haven't tested it thoroughly enough yet, principally in 
> case it breaks anything else. The problem is that the ROI handling the 
> connectivity mapping uses does not deal with non-sequential region 
> numbering, I'm attaching my patch, but perhaps one of the Camino authors 
> could look over it to see whether it's likely to break anything.
> 
> It also adds the following options:
> -nopng : don't bother doing png output/displaying map
> -outmat : out text matrix name
> -outpng : out png name

Just to report back to the group the results of the above.

The patch kindly suggested by Ian works a treat for getting conmap to 
work.  However, it does also significantly break other parts of Camino. 
  For example, the track command which you need to have run prior to 
generating a connectivity map no longer processes the seed file 
correctly (it just crashes out with ROI errors).

Can anybody from the Camino team suggest a fix that makes the 
connectivity maps work but remains compatible with the rest of Camino?

Thanks

Gavin