[Camino-users] tractography

Curci Marina Carmela marina.curci at epfl.ch
Thu Apr 19 03:11:50 PDT 2012


Hello to everyone!

I'm new on camino and I'm trying to use the toolkit with my DTI dataset.
I have some problems during the tractography.
The mask I'm using it's a mask of the white matter obtained with Freesurfer. Physical dimensions are the same of the file containing the tensor, but resolutions are different.
When i try to launch track command I have this kind of error:


track -inputmodel dt -seedfile /home/marina/Desktop/fsmask_1mm_resamp2x2x2.nii.gz -curvethresh 60 -inputfile DTI_RAWDATA/difftensor_nomask.Bdouble -outputfile DTI_RAWDATA/traccia.Bfloat

Apr 19, 2012 12:09:44 PM apps.StreamlineTractography initVariables
INFO: Defining input physical space from seed file
Apr 19, 2012 12:09:46 PM misc.LoggedException logException
SEVERE: Exception in thread "main" class data.DataSourceException: No more voxels in data source.
	at data.VoxelOrderDataSource.readNextVoxel(VoxelOrderDataSource.java:230)
	at data.VoxelOrderDataSource.nextVoxel(VoxelOrderDataSource.java:189)
	at tractography.DT_TractographyImage.<init>(DT_TractographyImage.java:81)
	at tractography.DT_TractographyImage.getDT_TractographyImage(DT_TractographyImage.java:277)
	at apps.StreamlineTractography.execute(StreamlineTractography.java:784)
	at apps.EntryPoint.main(EntryPoint.java:275)

I'm not able to find where is the problem. Could you help me please??

Thank you,
Marina


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