[Camino-users] linrecon - qball

[Curci Marina Carmela]

Hello to everyone!!
Today I have a problem with qball ODF reconstruction.
My qball dataset has 257 volumes and in the schemefile I have also 257 directions.
I copy here the lines appeared in my terminal:


marina at marina-desktop:~/Desktop/camino/QBALL_RAWDATA$ linrecon qball.Bfloat SIEMENS256.scheme matrixrecon.Bdouble -bgmask /home/marina/Desktop/fsmask_1mm_resamp2x2x2.nii.gz -header QBALL.nii.gz > ODF.Bdouble


Apr 23, 2012 2:20:23 PM misc.LoggedException logException
SEVERE: Exception in thread "main" class data.DataSourceException: End of file reached without completing voxel.
	at data.VoxelOrderDataSource.readNextVoxel(VoxelOrderDataSource.java:279)
	at data.VoxelOrderDataSource.nextVoxel(VoxelOrderDataSource.java:189)
	at inverters.LinearInversion.<init>(LinearInversion.java:70)
	at apps.LinearRecon.initVariables(LinearRecon.java:39)
	at apps.Executable.<init>(Executable.java:28)
	at apps.ModelFit.<init>(ModelFit.java:49)
	at apps.LinearRecon.<init>(LinearRecon.java:30)
	at apps.EntryPoint.getExecutable(EntryPoint.java:124)
	at apps.EntryPoint.main(EntryPoint.java:273)

Could not read the matrix.  Expecting 257 elements per row.
Exception in thread "main" java.lang.RuntimeException: data.DataSourceException: End of file reached without completing voxel.
	at inverters.LinearInversion.<init>(LinearInversion.java:75)
	at apps.LinearRecon.initVariables(LinearRecon.java:39)
	at apps.Executable.<init>(Executable.java:28)
	at apps.ModelFit.<init>(ModelFit.java:49)
	at apps.LinearRecon.<init>(LinearRecon.java:30)
	at apps.EntryPoint.getExecutable(EntryPoint.java:124)
	at apps.EntryPoint.main(EntryPoint.java:273)
Caused by: data.DataSourceException: End of file reached without completing voxel.
	at data.VoxelOrderDataSource.readNextVoxel(VoxelOrderDataSource.java:279)
	at data.VoxelOrderDataSource.nextVoxel(VoxelOrderDataSource.java:189)
	at inverters.LinearInversion.<init>(LinearInversion.java:70)
	... 6 more

Could you help me please?
Thank you,
Marina