[Camino-users] Trajectory files and scan command

[Damien McHugh]

Hi all,

I'm having some problems generating signals from the trajectory files output from simulations. My initial command looks like this:

datasynth -walkers ${WALKERS} -tmax ${TIMESTEPS} -duration ${DUR} -initial ${INIT} -p ${PERM} -voxels 1 -packing ${PACK} -cylinderrad ${RAD} -cylinder sep ${SEP} -diffusivity ${DIFF}  -trajfile trajout.traj

>From the tutorials I understand I need to then use the scan command to generate signals according to a given schemefile:

scan -trajfile trajout.traj -schemefile myscheme.scheme > scan outpt.bfloat


Doing this gives the following error message:

Oct 16, 2012 2:03:36 PM simulation.measurement.AgnosticScan main
WARNING: scan command can only use PGSE sequences.
Oct 16, 2012 2:03:36 PM tools.CL_Initializer checkParsing
WARNING: WARNING: couldn't parse arg 4: 'outpt.bfloat'
Exception in thread "main" java.lang.ArrayIndexOutOfBoundsException: 0
    at simulation.measurement.AgnosticScan.main(AgnosticScan.java:427)

Any help is much appreciated,

Damien
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