[Camino-users] probabilistic tractography

[Philip Cook]

I'm at ismrm right now so apologies for the brief reply. Please see the man page for conmat

Sent from my iPhone

On Apr 23, 2013, at 9:03 AM, Mojdeh Zamyadi <mojdehzm at gmail.com> wrote:

> Hi all,
> 
> I want to perform probabilistic tractography using Camino to construct connectivity matrices. To do this I'm using the AAL template with more than 100 cortical and subcortical regions. I've transformed the AAL VOIs into the DTI space of each subject using linear and nonlinear registration. My question now is, should I use "track" command with "-inputmodel bayesdirac" option and use the whole transformed AAL atlas as seedfile (eg. -seedfile Control/aal_ROIs/aal_tformed.nii.gz)? Or should I create separate mask/seed images for each region and perform the tractography for each seed? Also, how can I get the the tracks between two seed regions? Your help would be greatly appreciated!
> 
> Thanks as always,
> -Mojdeh
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