[Camino-users] ask for help on conmat

[lujiao luo]

Hello experts,

I want to visualize the connectivity map and connectivity segmentation
using Camino. I've read the instrution of  -conmat flag on manual list. But
I still have some problems below:

(1) After finish doing the conmat, I obtained .csv files, but I couldn't
figure out how to visualize the file. Should I use the camino_trackvis tool
to convert the file into .trk format, and visualize it in trackvis?

(2) What flag should I use to complete the function below:

conmap -inputfile brain_track.Bdouble -roifile wm_undersampled.nii.gz

since the conmap flag is obsolete now? I really felt that connectivity map
was really a cool thing.

(3) I obtained my target volume by converting freesurfer lh.V1.label to
lh.V1.nii. I am curious that if is it suitable a suitable target file which
should also contain label information?

(4) Can I use lh.BA.nii which convert from freesufer lh.BA.annot and
contain several labels as a target file?

Thanks so much for any help!

Yours
Lulu
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