[Camino-users] track command error
Mojdeh Zamyadi
mojdehzm at gmail.com
Fri Oct 18 11:44:46 PDT 2013
Hi all,
I have a problem with "track" command! I get the following error after
running the command:
track -inputfile DTI_ec_VoxelOrder.Bfloat -inputmodel bayesdirac_dt
-schemefile bvec_rot.scheme -iterations 50 -seedfile
../../../DTI_T1_atlas_reg/ISP10/mask_final.nii.gz -brainmask
../preproc/B0_brain_mask.nii.gz -pointset 0 > bayesianTracts.Bfloat
ERROR:
Oct 18, 2013 2:36:10 PM apps.StreamlineTractography initVariables
INFO: Defining input physical space from seed file
Oct 18, 2013 2:36:12 PM imaging.ImageHeader sameSpace
INFO: Different voxel to physical space transforms between
../../../DTI_T1_atlas_reg/ISP10/mask_final.nii.gz and
../preproc/B0_brain_mask.nii.gz
Oct 18, 2013 2:36:12 PM misc.LoggedException logException
SEVERE: Exception in thread "main" class misc.LoggedException: Brain
mask must be in the same voxel space as the input data
at apps.StreamlineTractography.execute(StreamlineTractography.java:573)
at apps.EntryPoint.main(EntryPoint.java:284)
Exception in thread "main" misc.LoggedException: Brain mask must be in
the same voxel space as the input data
at apps.StreamlineTractography.execute(StreamlineTractography.java:573)
at apps.EntryPoint.main(EntryPoint.java:284)
I've been running the same command on several other subjects without any
difficulty! I've looked at brainmask and seedfile and they seem to be in
the same space (once again all these images were created using the same
steps similar to my other subjects)! I've used fslinfo and still don't
see any difference between the voxel spaces of the two images (as
mentioned in the error message). Has anyone come across this issue
before? any suggestions on what I should look into to fix the problem?
Thanks,
-Mojdeh
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