[Camino-users] -drawcrosssection option

[stefania oliviero]

Hi Matt 
thank a lot! Using the new command the problem is solved.

Cheers,
Stefania

From: matt.hall at ucl.ac.uk
To: stefania.oliviero at hotmail.it
CC: camino-users at www.nitrc.org
Subject: RE: [Camino-users] -drawcrosssection option
Date: Fri, 21 Feb 2014 09:25:39 +0000









Hi Stephania,
 
That’s my fault, I’m afraid – I recently changed the size of the image generated by the –drawcrossection option from 500x500 to 1000x1000 and must have forgotten
 to change it back. If you use
display -size 1000x1000 -depth 8 debug_crossSec_118.gray
 
instead you should get the image you’re after.
 
Cheers,
 
Matt.
 


From: camino-users-bounces at www.nitrc.org [mailto:camino-users-bounces at www.nitrc.org]
On Behalf Of stefania oliviero

Sent: Thursday, February 20, 2014 1:10 PM

To: camino-users at www.nitrc.org

Subject: [Camino-users] -drawcrosssection option


 

Hi all

I am a new user of the camino toolkit, sorry if my questions are too much basic.



I'm following the instructions at the end of the ActiveAx tutorial:

http://cmic.cs.ucl.ac.uk/camino//index.php?n=Tutorials.ActiveAx#toc1



When I execute the following commands
DIFF=6.0E-10;
LATSIZE=1.4E-5
GAMA=5.9242
GAMB=1.065E-7

datasynth -walkers 5 -tmax 5 -geometry inflammation -numcylinders 100 -p 0.0 -initial uniform -voxels 1 \
-increments 1 -separateruns -latticesize ${LATSIZE} -schemefile ActiveAxG140_PM.scheme1 -gamma ${GAMA} ${GAMB} \
-diffusivity ${DIFF} -substrateinfo -drawcrosssection LamD1aSubstrate.gray > /tmp/test.Bfloat > LamD1a.info
the outputs are these three files:
test.Bfloat 
LamD1a.info
debug_crossSec_118.gray instead of LamD1aSubstrate.gray

Then I execute 

 display -size 500x500 -depth 8 debug_crossSec_118.gray

and have the following image instead of that showed on the tutorial...

WHAT'S THE PROBLEM?
... I tried to solve my problem looking for more information about -drawcrosssection option, but I failed.

Thanks a lot
Stefania 


 

 		 	   		  
-------------- next part --------------
An HTML attachment was scrubbed...
URL: <http://www.nitrc.org/pipermail/camino-users/attachments/20140303/b919f387/attachment.html>