[Camino-users] Error using sfPeaks
Parvathaneni, Prasanna
prasanna.parvathaneni at vanderbilt.edu
Thu Oct 23 20:21:59 PDT 2014
Hi,
We are trying to use the qball reconstruction with spherical harmonics order 4 as indicated in the tutorial for squirrel monkey data set whose scheme file is as attached. Its dimensions are 128X192X96.
Following are the commands
#qballmx -schemefile data1.scheme -basistype sh -order 4 > qballMatrix_data1_SH4.Bdouble
#linrecon dwi_data1.Bfloat data1.scheme qballMatrix_data1_SH4.Bdouble -normalize -bgmask brain_mask.nii.gz > dwi_ODF_data1_SH4.Bdouble
#sfpeaks -inputmodel sh -order 6 -numpds 3 -searchradius 0.8 -pointset 2 < dwi_ODF_data1_SH4.Bdouble > dwi_ODF_data1_SH4_PDs.Bdouble
Attached is the error message. Can you please assist.
Thanks,
Prasanna
-------------- next part --------------
An HTML attachment was scrubbed...
URL: <http://www.nitrc.org/pipermail/camino-users/attachments/20141024/75d93527/attachment.html>
-------------- next part --------------
An embedded and charset-unspecified text was scrubbed...
Name: data1.scheme
URL: <http://www.nitrc.org/pipermail/camino-users/attachments/20141024/75d93527/attachment.ksh>
-------------- next part --------------
An embedded and charset-unspecified text was scrubbed...
Name: qball_sfpeaks_output_Error.txt
URL: <http://www.nitrc.org/pipermail/camino-users/attachments/20141024/75d93527/attachment.txt>
More information about the Camino-users
mailing list