[Camino-users] simulation/geometry/substrates/substrate.java method amen

[Hall, Matt]

There's a problem with your intersection checking code. You'll need to isolate the individual step and spin being updated and work through the geometry, the step amendment, and find out what's causing the problem.


The error you're getting is caused by Camino rejecting more than ten candidate steps. Whilst it is (very) occasionally necessary to reject a single step, it is basically never necessary to reject multiple steps and hence this check.

________________________________
From: camino-users-bounces at www.nitrc.org <camino-users-bounces at www.nitrc.org> on behalf of stefania oliviero <stefania.oliviero at hotmail.it>
Sent: 26 July 2017 12:12:55
To: camino-users at www.nitrc.org
Subject: [Camino-users] simulation/geometry/substrates/substrate.java method amen


Dear all,

I implemented a new substrate with myelinated axons represented as a pair of coaxial cylinders, each of them with an own membrane permeability ...

I declared for this kind of substrate the same method amend defined in substrate.java. Unfortunately each time I run the simulation, the error "substrate amendment has exceeded max iterations allowed " appears...

The question is: what could be the characteristic of my substrate that involves such a problem?


thanks a lot


Stefania Oliviero

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