[Camino-users] Bfloat to Matlab

[Mahmoud]

Hello all,

I used the following commands to do tractography with camino. Could someone
please let me know whether I did it right and if it's correct how can I
read that bfloat file in MATLAB? My goal is to have the coordinate of fiber
tracts in MATLAB.

*fslmaths  $1/$sub/data/data_FA.nii.gz -thr 0.3 -bin
$1/$sub/tract/data_FA_thr03.nii.gz*
*cp $1/$sub/data/nodif_brain_mask_trimmed.nii.gz
$1/$sub/tract/nodif_brain_mask_trimmed.nii.gz*

*TVFromEigenSystem -basename $1/$sub/data/data -type FSL -out
$1/$sub/tract/data_tensor.nii.gz*
*/camino/bin/nii2dt -inputfile $1/$sub/tract/data_tensor.nii.gz -bgmask
$1/$sub/tract/nodif_brain_mask_trimmed.nii.gz -uppertriangular >
$1/$sub/tract/tensor.Bdouble*
*cat $1/$sub/tract/tensor.Bdouble | track -inputmodel dt -seedfile
$1/$sub/tract/data_FA_thr03.nii.gz -outputroot $1/$sub/tract/WB_one_tensor
-curvethresh 80 -anisthresh 0.3*
*camino_to_trackvis -i $1/$sub/tract/WB_one_tensor1.Bfloat -o
$1/$sub/tract/WB_one_tensor.trk --nifti
$1/$sub/tract/nodif_brain_mask_trimmed.nii.gz --phys-coords*

Thank you!
Mahmoud
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