[Camino-users] Parallelize single voxel datasynth simulation?

Bauman, Andrew Thomas andrew.bauman at ubc.ca
Mon Apr 1 10:50:23 PDT 2019


Hi,

I am trying to run a single voxel diffusion simulation on a fairly complex mesh (500000 faces). I have noticed it seems to only run on one core and takes an extremely long time to complete (more than a week). I was wondering if there is a possibility to parallelize this command?  Can I run multiple instances of the datasynth command and combine the data afterwards?

Below is the command I am running:
datasynth -walkers 80000 -tmax 2000 -p 0.0 -voxels 1 -schemefile DWI.scheme -initial uniform -diffusivity 0.6E-9 -substrate ply -plyfile meshfile.ply > sim_output.bfloat

Thanks!
Andrew
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