[dmritool-discussion] Paraview help

[Nagesh Adluru]

Hi Jian,

I enabled the AnalyzeNiftiIO plugin and am able to load the GFA nii file
into the paraview but was not able to adjust the origin manually! I am
hoping your new documentation will have that info.
Also to make the colors of the glyphs to have RGB color coding based on
their primary orientation.

I look forward to your updated instructions on the visualization aspects
for outputs from DMRITool.

Thanks so much for your help!
Sincerely,
Nagesh

On Tue, Mar 24, 2015 at 7:38 AM, Nagesh Adluru <nagesh.adluru at gmail.com>
wrote:

> Hi Jian,
>
> Thanks so much for the help and for going to add to the documentation. I
> will try it out.
>
> Sincerely,
> Nagesh
>
> On Mon, Mar 23, 2015 at 10:09 PM, Jian Cheng <jian.cheng.1983 at gmail.com>
> wrote:
>
>>  Hi Nagesh,
>>
>> Please check the data formats supported in paraview.
>> http://www.paraview.org/Wiki/ParaView/Data_formats
>> Paraview originally can visualize vtk files.
>> For the GFA map which is in nifti format, paraview can also visualize it
>> when you enable the AnalyzeNiftiIO plugin.
>> You can enable it by clicking "Tools" -> "Manage Plugins" ->
>> "AnalyzeNiftiIO".  Note that it supports *.nii file, but not *.nii.gz file,
>> and you may need to set the origin manually in paraview such that the gfa
>> map can be visualized in the same coordinate as the EAP profile in vtk
>> format.
>> You can also enable other useful plugins, e.g. "quadview".
>>
>> Thanks for your feedback. I will add more explanation on it to the
>> documentation.
>>
>> best,
>> Jian Cheng
>>
>>
>> On 03/23/2015 05:32 PM, Nagesh Adluru wrote:
>>
>> Hello Jian,
>>
>>  Hope all is well! I am new to paraview and could you put a simple
>> tutorial on how to load the EAP profile vtk files obtained from DMRITool in
>> paraview with an underlay of the GFA image?
>>
>>  The glyphs load fine in paraview but I am not able to figure out how to
>> get the GFA underlay in paraview!
>>
>>  Thanks so much for your help!
>> Sincerely,
>> Nagesh
>>
>>
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