[Mrtrix-discussion] Question on fiber tracking

[Michael Zeineh]

Thank you Donald, that definitely helps.

One more ? ... the orientation overlay plots look beautiful, but it
would be nice if the plots could be displayed in a more spaced out
manner (i.e. every other or 3rd mr voxel gets a glyph). Otherwise, it
is difficult to identify anything other than the primary fiber
orientation. Is there a way to do this?

Thank you,
Michael

On Mon, Jun 7, 2010 at 10:39 PM, Donald Tournier
<d.tournier at brain.org.au> wrote:
> Hi Michael,
> There is a new option '-stop' that you can pass to streamtrack. I think it
> was introduced in version 0.2.8. That should be what you're looking for.
> Cheers,
> Donald.
>
> On 8 June 2010 09:47, Michael Zeineh <mmzeineh at gmail.com> wrote:
>>
>> Hi,
>>
>> Is there a way with mrtrix for the fiber tracking to stop when it hits
>> (or before it leaves) an inclusion region? This would be a nice option
>> to only extract the tracks of interest between two ROIs. Right now, if
>> I have two ROIs, tracks seem to go beyond both after going through
>> either ROI.
>>
>> Thank you,
>> Michael
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>
>
>
> --
> Jacques-Donald Tournier (PhD)
> Brain Research Institute, Melbourne, Australia
> Tel: +61 (0)3 9496 4078
>