[Mrtrix-discussion] streamtrack and whole brain tractography

[mchandra pal]

Hi Donald,

it works with minus sign. Thank you. :)
Thanks Luis for your suggestion.

-mc pal

On Mon, May 16, 2011 at 11:35 PM, Donald Tournier
<d.tournier at brain.org.au>wrote:

> Hi Luis,
>
> Your command looks fine to me. The only thing that looks a little different
> is your dash symbol. It looks like you're using a long em-dash ('–'), rather
> than the more standard en-dash or minus sign ('-'), which is what MRtrix
> expects. I'm guessing you're using a non-US keyboard? Try to use a short
> dash sign if you can find it.
>
> Hope that helps,
>
> Donald.
>
>
> On 16 May 2011 18:44, mchandra pal <mcpalin at gmail.com> wrote:
>
>> Hi,
>>
>> Thank you for your kind reply. I have now included the mrtrix directory in
>> the system path. But when I am using the same command (streamtrack DT_STREAM
>> DWI.img –grad encoding.b –seed wm_t.mif –mask brain_mask.img tracks.tck),
>> its now showing
>>
>> streamtrack: expected exactly 3 arguments (9 supplied).
>>
>> What is going wrong?
>> -mc pal
>>
>>
>>
>> On Mon, May 16, 2011 at 3:34 PM, Luis Morís <
>> luis.moris.fernandez at gmail.com> wrote:
>>
>>> Hi,
>>>
>>> It seems like you've not included mrtrix directory containing the
>>> executables in the system path.
>>>
>>> Best,
>>>
>>> Luis.
>>>
>>>
>>>
>>> On Mon, May 16, 2011 at 11:43 AM, mchandra pal <mcpalin at gmail.com>
>>> wrote:
>>> > Hi.
>>> >
>>> > I was trying to do whole brain tractography using streamtrack. I am
>>> using
>>> > the following command:
>>> >
>>> > streamtrack DT_STREAM DWI.img –grad encoding.b –seed wm_t.mif –mask
>>> > brain_mask.img tracks.tck
>>> >
>>> >
>>> >
>>> > Its showing: ‘streamtrack’ is not recognized as an internal or external
>>> > command, operable program or batch file. I am using
>>> mrtrix-0.2.9-win32.exe.
>>> >
>>> > What's wrong in my command?
>>> >
>>> > - mc pal
>>> >
>>> > _______________________________________________
>>> > Mrtrix-discussion mailing list
>>> > Mrtrix-discussion at www.nitrc.org
>>> > http://www.nitrc.org/mailman/listinfo/mrtrix-discussion
>>> >
>>> >
>>>
>>
>>
>> _______________________________________________
>> Mrtrix-discussion mailing list
>> Mrtrix-discussion at www.nitrc.org
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>>
>>
>
>
> --
> Jacques-Donald Tournier (PhD)
> Brain Research Institute, Melbourne, Australia
> Tel: +61 (0)3 9035 7033
>
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