[Mrtrix-discussion] missing mrtrix.conf (mrtrix-0.2.9-win32.exe on WinXP) and csdeconv error

[Yong Li]

Dear Thijs & Ben,

Thank you very much for your reply! It works as you suggested!

Have a nice weekend!

Yong

Date: Wed, 25 May 2011 13:47:56 +0000
> From: Jeurissen Ben <Ben.Jeurissen at ua.ac.be>
> Subject: RE: [Mrtrix-discussion] missing mrtrix.conf
>        (mrtrix-0.2.9-win32.exe on      WinXP) and csdeconv error
> To: "mrtrix-discussion at public.nitrc.org"
>        <mrtrix-discussion at public.nitrc.org>
> Message-ID:
>        <384E4D541D819449ABBBD507434317D10298E7 at xmail30.ad.ua.ac.be>
> Content-Type: text/plain; charset="us-ascii"
>
> Indeed, the configuration file is a plain text file that has to be created
> by the user (the same holds for the Linux version, so this is not a Windows
> specific thing).  For details on where to store the file, see
> http://www.brain.org.au/software/mrtrix/appendix/config.html.
>
> Cheers,
> Ben
>
> From: mrtrix-discussion-bounces at public.nitrc.org [mailto:
> mrtrix-discussion-bounces at public.nitrc.org] On Behalf Of Thijs Dhollander
> Sent: dinsdag 24 mei 2011 19:41
> To: mrtrix-discussion at public.nitrc.org
> Subject: RE: [Mrtrix-discussion] missing mrtrix.conf
> (mrtrix-0.2.9-win32.exe on WinXP) and csdeconv error
>
> Hi Yong Li,
>
> I'm also running MRtrix since some time on WinXP.  If I remember it right,
> I think I created mrtrix.conf myself directly at C:\mrtrix.conf (i.e. to be
> used system-wide).
>
> About the "failed to converge" problem: you're probably using
> super-resolved CSD inherently (because the SH order you picked has more
> parameters than your acquired data).  This problem should normally be less
> severe or completely go away if you use a lower order (i.e. lower value for
> lmax).  If you only get a few of these errors, it's probably not even a
> problem. ;-)
> More info at: http://www.brain.org.au/software/mrtrix/faq.html#converge
>
> Kind regards,
>
> Thijs Dhollander
> PhD Student
>
> thijs.dhollander at uz.kuleuven.ac.be
> tel. +32 16 34 90 37
> gsm. +32 475 36 44 27
>
> Medical Image Computing (K.U.Leuven, ESAT/PSI, MIC)
> Medical Imaging Research Center | UZ Gasthuisberg | Herestraat 49 - bus
> 7003 | B-3000 Leuven | http://www.medicalimagingcenter.be
>
> From: mrtrix-discussion-bounces at public.nitrc.org [mailto:
> mrtrix-discussion-bounces at public.nitrc.org] On Behalf Of Yong Li
> Sent: dinsdag 24 mei 2011 17:51
> To: mrtrix-discussion at public.nitrc.org
> Subject: [Mrtrix-discussion] missing mrtrix.conf (mrtrix-0.2.9-win32.exe on
> WinXP) and csdeconv error
>
> Dear Ben & Donald,
>
> Thank you very much to develop such a nice software!
>
> I just installed the mrtrix-0.2.9-win32.exe on WinXP. Is it true that
> 'Windows installation' is stll 'Not yet supported'
> (./MRtrix/doc/install/windows.html)? I do not find the mrtrix.conf
> (./MRtrix/doc/appendix/config.html) file anywhere in my hard drive. Any idea
> why and where please? My first try of analyzing my data was ok until the
> csdeconv error-'csdeconv: failed to converge'. How could I correct this
> error please? Is there a possibility to apply motion and distortion
> correction in the preprocessiong? Thank you again!
>
> Sincerely yours,
>
> Yong Li, PhD
> ----------------------------------------------
> Dr. Yong Li, M.Sci.
> Neurologische Klinik, Klinikum rechts der Isar
> Technische Universitaet Muenchen
> Ismaninger Str. 22, 81675 Muenchen
> Email: Yong.Li at lrz.tu-muenchen.de<mailto:Yong.Li at lrz.tu-muenchen.de>,
> YongLi86 at gmail.com<mailto:YongLi86 at gmail.com>
>
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