[Mrtrix-discussion] having trouble building on CentOS 6

[Luis Concha]

The computer cluster I used had CentOS 5 installed. I gave up trying to
compile on CentOS and looked into a debian chroot environment. I never had
the time to finish it, but it looked promising. I ended up building my own
beowulf cluster with ubuntu. I wish you luck in your compilation attempts.
If you succeed, please let us know, as I suspect there are more CentOS
users around here.

Luis



Dr. Luis Concha
Instituto de Neurobiología
Laboratorio C-12
UNAM, Campus Juriquilla
Boulervard Juriquilla 3001
Juriquilla, Querétaro.
C.P. 76230
México
Tel (442) 2 38 10 53
Fax (442) 2 38 10 46
www.inb.unam.mx


On Tue, Mar 19, 2013 at 3:40 PM, Henry Mensch <Henry.Mensch at va.gov> wrote:

> I'm on a CentOS 6 system:
>
> Linux musca 2.6.32-358.0.1.el6.x86_64 #1 SMP Wed Feb 20 11:05:23 EST 2013
> x86_64 x86_64 x86_64 GNU/Linux
>
> and I'm trying to build … the build fails early with these errors:
>
> [root at musca mrtrix-0.2.10]# ./build
> Package glibmm-2.4 was not found in the pkg-config search path.
> Perhaps you should add the directory containing `glibmm-2.4.pc'
> to the PKG_CONFIG_PATH environment variable
> No package 'glibmm-2.4' found
> WARNING: unable to find glibmm-2.4,gthread-2.0 configuration
> Package gtkmm-2.4 was not found in the pkg-config search path.
> Perhaps you should add the directory containing `gtkmm-2.4.pc'
> to the PKG_CONFIG_PATH environment variable
> No package 'gtkmm-2.4' found
> WARNING: unable to find gtkmm-2.4 configuration
> Package gtkmm-2.4 was not found in the pkg-config search path.
> Perhaps you should add the directory containing `gtkmm-2.4.pc'
> to the PKG_CONFIG_PATH environment variable
> No package 'gtkmm-2.4' found
> Package gtkglext-1.0 was not found in the pkg-config search path.
> Perhaps you should add the directory containing `gtkglext-1.0.pc'
> to the PKG_CONFIG_PATH environment variable
> No package 'gtkglext-1.0' found
> WARNING: unable to find gtkmm-2.4 configuration
> Package glibmm-2.4 was not found in the pkg-config search path.
> Perhaps you should add the directory containing `glibmm-2.4.pc'
> to the PKG_CONFIG_PATH environment variable
> No package 'glibmm-2.4' found
> WARNING: unable to find glibmm-2.4,gthread-2.0 configuration
> Package gtkmm-2.4 was not found in the pkg-config search path.
> Perhaps you should add the directory containing `gtkmm-2.4.pc'
> to the PKG_CONFIG_PATH environment variable
> No package 'gtkmm-2.4' found
> WARNING: unable to find gtkmm-2.4 configuration
> Package gtkmm-2.4 was not found in the pkg-config search path.
> Perhaps you should add the directory containing `gtkmm-2.4.pc'
> to the PKG_CONFIG_PATH environment variable
> No package 'gtkmm-2.4' found
> Package gtkglext-1.0 was not found in the pkg-config search path.
> Perhaps you should add the directory containing `gtkglext-1.0.pc'
> to the PKG_CONFIG_PATH environment variable
> No package 'gtkglext-1.0' found
> WARNING: unable to find gtkmm-2.4 configuration
> Traceback (most recent call last):
>   File "./build", line 968, in <module>
>     [ Entry(item) for item in targets ]
>   File "./build", line 245, in __init__
>     if is_executable (self.name): self.set_executable()
>   File "./build", line 276, in set_executable
>     '$bin$': [ self.name ] })
>   File "./build", line 375, in fillin
>     if item in keyvalue: cmd += keyvalue[item]
> TypeError: 'NoneType' object is not iterable
> [root at musca mrtrix-0.2.10]# rpm -q -a | grep -i glibmm
> glibmm24-2.22.1-1.el6.x86_64
> ^P[root at musca mrtrix-0.2.10]# rpm -q -a | grep -i gtkmm
> gtkmm24-2.18.2-1.el6.x86_64
> [root at musca mrtrix-0.2.10]# rpm -q -a | grep glibmm
> glibmm24-2.22.1-1.el6.x86_64
>
> You can see that the libraries it seems to want have RPMs installed …
>
> and the libraries are actually present:
>
> [root at musca mrtrix-0.2.10]# find /usr -name libglibmm\* -print
> /usr/lib64/libglibmm-2.4.so.1
> /usr/lib64/libglibmm-2.4.so.1.2.0
> /usr/lib64/libglibmm_generate_extra_defs-2.4.so.1
> /usr/lib64/libglibmm_generate_extra_defs-2.4.so.1.2.0
>
> so it looks like the real problem is that there are no entries in
> /usr/lib64/pkgconfig for these libraries.
>
> SO: how do I get around this?
>
> --
> Henry Mensch / Systems and Storage Manager
> Center for Imaging of Neurodegenerative Diseases
> VA Medical Center, San Francisco CA  USA
> a: +1.415.221.4810 x6466 / : +1.415.668.2864
> :: henry.mensch at va.gov
> w: http://www.cind.research.va.gov/
>
>
>
>
> _______________________________________________
> Mrtrix-discussion mailing list
> Mrtrix-discussion at www.nitrc.org
> http://www.nitrc.org/mailman/listinfo/mrtrix-discussion
>
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