[Mrtrix-discussion] having trouble building on CentOS 6

[Henry Mensch]

Sadly that won't work for us--our entire environment is CentOS 5 except for this one host I'm working on for this project which is RHEL 6 (I said it was CentOS 6 below but it's actually RHEL 6 for what little difference that makes) … other important tools in our environment require RHEL/CentOS and so launching into Ubuntu isn't an attractive proposition.

Maybe, if someone could share with me what the various .pc files which I don't have look like, I can use that info to get further on this build … 

-- Henry
--------

On Mar 19, 2013, at 2:58 PM, Luis Concha wrote:

> The computer cluster I used had CentOS 5 installed. I gave up trying to compile on CentOS and looked into a debian chroot environment. I never had the time to finish it, but it looked promising. I ended up building my own beowulf cluster with ubuntu. I wish you luck in your compilation attempts. If you succeed, please let us know, as I suspect there are more CentOS users around here.
> 
> Luis
> 
> 
> 
> Dr. Luis Concha
> Instituto de Neurobiología
> Laboratorio C-12
> UNAM, Campus Juriquilla
> Boulervard Juriquilla 3001
> Juriquilla, Querétaro.
> C.P. 76230
> México
> Tel (442) 2 38 10 53
> Fax (442) 2 38 10 46
> www.inb.unam.mx
> 
> 
> On Tue, Mar 19, 2013 at 3:40 PM, Henry Mensch <Henry.Mensch at va.gov> wrote:
> I'm on a CentOS 6 system:
> 
> Linux musca 2.6.32-358.0.1.el6.x86_64 #1 SMP Wed Feb 20 11:05:23 EST 2013 x86_64 x86_64 x86_64 GNU/Linux
> 
> and I'm trying to build … the build fails early with these errors:
> 
> [root at musca mrtrix-0.2.10]# ./build
> Package glibmm-2.4 was not found in the pkg-config search path.
> Perhaps you should add the directory containing `glibmm-2.4.pc'
> to the PKG_CONFIG_PATH environment variable
> No package 'glibmm-2.4' found
> WARNING: unable to find glibmm-2.4,gthread-2.0 configuration
> Package gtkmm-2.4 was not found in the pkg-config search path.
> Perhaps you should add the directory containing `gtkmm-2.4.pc'
> to the PKG_CONFIG_PATH environment variable
> No package 'gtkmm-2.4' found
> WARNING: unable to find gtkmm-2.4 configuration
> Package gtkmm-2.4 was not found in the pkg-config search path.
> Perhaps you should add the directory containing `gtkmm-2.4.pc'
> to the PKG_CONFIG_PATH environment variable
> No package 'gtkmm-2.4' found
> Package gtkglext-1.0 was not found in the pkg-config search path.
> Perhaps you should add the directory containing `gtkglext-1.0.pc'
> to the PKG_CONFIG_PATH environment variable
> No package 'gtkglext-1.0' found
> WARNING: unable to find gtkmm-2.4 configuration
> Package glibmm-2.4 was not found in the pkg-config search path.
> Perhaps you should add the directory containing `glibmm-2.4.pc'
> to the PKG_CONFIG_PATH environment variable
> No package 'glibmm-2.4' found
> WARNING: unable to find glibmm-2.4,gthread-2.0 configuration
> Package gtkmm-2.4 was not found in the pkg-config search path.
> Perhaps you should add the directory containing `gtkmm-2.4.pc'
> to the PKG_CONFIG_PATH environment variable
> No package 'gtkmm-2.4' found
> WARNING: unable to find gtkmm-2.4 configuration
> Package gtkmm-2.4 was not found in the pkg-config search path.
> Perhaps you should add the directory containing `gtkmm-2.4.pc'
> to the PKG_CONFIG_PATH environment variable
> No package 'gtkmm-2.4' found
> Package gtkglext-1.0 was not found in the pkg-config search path.
> Perhaps you should add the directory containing `gtkglext-1.0.pc'
> to the PKG_CONFIG_PATH environment variable
> No package 'gtkglext-1.0' found
> WARNING: unable to find gtkmm-2.4 configuration
> Traceback (most recent call last):
>   File "./build", line 968, in <module>
>     [ Entry(item) for item in targets ]
>   File "./build", line 245, in __init__
>     if is_executable (self.name): self.set_executable()
>   File "./build", line 276, in set_executable
>     '$bin$': [ self.name ] })
>   File "./build", line 375, in fillin
>     if item in keyvalue: cmd += keyvalue[item]
> TypeError: 'NoneType' object is not iterable
> [root at musca mrtrix-0.2.10]# rpm -q -a | grep -i glibmm
> glibmm24-2.22.1-1.el6.x86_64
> ^P[root at musca mrtrix-0.2.10]# rpm -q -a | grep -i gtkmm
> gtkmm24-2.18.2-1.el6.x86_64
> [root at musca mrtrix-0.2.10]# rpm -q -a | grep glibmm
> glibmm24-2.22.1-1.el6.x86_64
> 
> You can see that the libraries it seems to want have RPMs installed …
> 
> and the libraries are actually present:
> 
> [root at musca mrtrix-0.2.10]# find /usr -name libglibmm\* -print
> /usr/lib64/libglibmm-2.4.so.1
> /usr/lib64/libglibmm-2.4.so.1.2.0
> /usr/lib64/libglibmm_generate_extra_defs-2.4.so.1
> /usr/lib64/libglibmm_generate_extra_defs-2.4.so.1.2.0
> 
> so it looks like the real problem is that there are no entries in /usr/lib64/pkgconfig for these libraries.
> 
> SO: how do I get around this?
> 
> --
> Henry Mensch / Systems and Storage Manager
> Center for Imaging of Neurodegenerative Diseases
> VA Medical Center, San Francisco CA  USA
> a: +1.415.221.4810 x6466 / : +1.415.668.2864
> :: henry.mensch at va.gov
> w: http://www.cind.research.va.gov/
> 
> 
> 
> 
> _______________________________________________
> Mrtrix-discussion mailing list
> Mrtrix-discussion at www.nitrc.org
> http://www.nitrc.org/mailman/listinfo/mrtrix-discussion
> 
> _______________________________________________
> Mrtrix-discussion mailing list
> Mrtrix-discussion at www.nitrc.org
> http://www.nitrc.org/mailman/listinfo/mrtrix-discussion

-- 
Henry Mensch / Systems and Storage Manager
Center for Imaging of Neurodegenerative Diseases
VA Medical Center, San Francisco CA  USA
a: +1.415.221.4810 x6466 / : +1.415.668.2864
:: henry.mensch at va.gov
w: http://www.cind.research.va.gov/