[Mrtrix-discussion] having trouble building on CentOS 6

[Henry Mensch]

No, they don't. The files aren't there, and they're not in the packages. 

On Mar 19, 2013, at 3:35 PM, Donald Tournier wrote:

> Assuming these files do exist, then it should be a simple matter of making sure pkg-config knows where to look for them - you should be able to set the PKG_CONFIG_PATH to achieve that, at least according the pkg-config man page. 
> On Tue, Mar 19, 2013 at 3:40 PM, Henry Mensch <Henry.Mensch at va.gov> wrote:
> I'm on a CentOS 6 system:
> 
> Linux musca 2.6.32-358.0.1.el6.x86_64 #1 SMP Wed Feb 20 11:05:23 EST 2013 x86_64 x86_64 x86_64 GNU/Linux
> 
> and I'm trying to build … the build fails early with these errors:
> 
> [root at musca mrtrix-0.2.10]# ./build
> Package glibmm-2.4 was not found in the pkg-config search path.
> Perhaps you should add the directory containing `glibmm-2.4.pc'
> to the PKG_CONFIG_PATH environment variable
> No package 'glibmm-2.4' found
> WARNING: unable to find glibmm-2.4,gthread-2.0 configuration
> Package gtkmm-2.4 was not found in the pkg-config search path.
> Perhaps you should add the directory containing `gtkmm-2.4.pc'
> to the PKG_CONFIG_PATH environment variable
> No package 'gtkmm-2.4' found
> WARNING: unable to find gtkmm-2.4 configuration
> Package gtkmm-2.4 was not found in the pkg-config search path.
> Perhaps you should add the directory containing `gtkmm-2.4.pc'
> to the PKG_CONFIG_PATH environment variable
> No package 'gtkmm-2.4' found
> Package gtkglext-1.0 was not found in the pkg-config search path.
> Perhaps you should add the directory containing `gtkglext-1.0.pc'
> to the PKG_CONFIG_PATH environment variable
> No package 'gtkglext-1.0' found
> WARNING: unable to find gtkmm-2.4 configuration
> Package glibmm-2.4 was not found in the pkg-config search path.
> Perhaps you should add the directory containing `glibmm-2.4.pc'
> to the PKG_CONFIG_PATH environment variable
> No package 'glibmm-2.4' found
> WARNING: unable to find glibmm-2.4,gthread-2.0 configuration
> Package gtkmm-2.4 was not found in the pkg-config search path.
> Perhaps you should add the directory containing `gtkmm-2.4.pc'
> to the PKG_CONFIG_PATH environment variable
> No package 'gtkmm-2.4' found
> WARNING: unable to find gtkmm-2.4 configuration
> Package gtkmm-2.4 was not found in the pkg-config search path.
> Perhaps you should add the directory containing `gtkmm-2.4.pc'
> to the PKG_CONFIG_PATH environment variable
> No package 'gtkmm-2.4' found
> Package gtkglext-1.0 was not found in the pkg-config search path.
> Perhaps you should add the directory containing `gtkglext-1.0.pc'
> to the PKG_CONFIG_PATH environment variable
> No package 'gtkglext-1.0' found
> WARNING: unable to find gtkmm-2.4 configuration
> Traceback (most recent call last):
>   File "./build", line 968, in <module>
>     [ Entry(item) for item in targets ]
>   File "./build", line 245, in __init__
>     if is_executable (self.name): self.set_executable()
>   File "./build", line 276, in set_executable
>     '$bin$': [ self.name ] })
>   File "./build", line 375, in fillin
>     if item in keyvalue: cmd += keyvalue[item]
> TypeError: 'NoneType' object is not iterable
> [root at musca mrtrix-0.2.10]# rpm -q -a | grep -i glibmm
> glibmm24-2.22.1-1.el6.x86_64
> ^P[root at musca mrtrix-0.2.10]# rpm -q -a | grep -i gtkmm
> gtkmm24-2.18.2-1.el6.x86_64
> [root at musca mrtrix-0.2.10]# rpm -q -a | grep glibmm
> glibmm24-2.22.1-1.el6.x86_64
> 
> You can see that the libraries it seems to want have RPMs installed …
> 
> and the libraries are actually present:
> 
> [root at musca mrtrix-0.2.10]# find /usr -name libglibmm\* -print
> /usr/lib64/libglibmm-2.4.so.1
> /usr/lib64/libglibmm-2.4.so.1.2.0
> /usr/lib64/libglibmm_generate_extra_defs-2.4.so.1
> /usr/lib64/libglibmm_generate_extra_defs-2.4.so.1.2.0
> 
> so it looks like the real problem is that there are no entries in /usr/lib64/pkgconfig for these libraries.
> 
> SO: how do I get around this?
> 
> --
> Henry Mensch / Systems and Storage Manager
> Center for Imaging of Neurodegenerative Diseases
> VA Medical Center, San Francisco CA  USA
> a: +1.415.221.4810 x6466 / : +1.415.668.2864
> :: henry.mensch at va.gov
> w: http://www.cind.research.va.gov/
> 
> 
> 
> 
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> 
> 
> -- 
> Dr Jacques-Donald Tournier
> Research Fellow
> 
> The Florey Institute of Neuroscience and Mental Health
> Melbourne Brain Centre - Austin Campus
> 245 Burgundy Street
> Heidelberg  Vic  3084
> Ph:  +61 3 9035 7033
> Fax:  +61 3 9035 7307
> www.florey.edu.au
> 
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-- 
Henry Mensch / Systems and Storage Manager
Center for Imaging of Neurodegenerative Diseases
VA Medical Center, San Francisco CA  USA
a: +1.415.221.4810 x6466 / : +1.415.668.2864
:: henry.mensch at va.gov
w: http://www.cind.research.va.gov/