[Mrtrix-discussion] Fwd: Mrtrix discussion

[Donald Tournier]

$ streamtrack SD_PROB csd.mif -seed seed_mask.nii -include target_mask.nii
your_tracks.tck

This should all be documented here:
http://www.brain.org.au/software/mrtrix/tractography/tracking.html#mask
Hopefully this is sufficiently detailed to answer any other questions you
might have.

Cheers,
Donald.


On 18 November 2013 11:27, Markus Gschwind <markus.gschwind at gmail.com>wrote:

>
>
> ---------- Forwarded message ----------
> From: Yachao Xie <yachaoxiexie at gmail.com>
> Date: 2013/11/18
> Subject: Re: Mrtrix discussion
> To: Markus Gschwind <markus.gschwind at gmail.com>
>
>
> Hi friends,
>   I have created two separate files.What about the next step?
>   Best wishes.
>
>
> 2013/11/18 Yachao Xie <yachaoxiexie at gmail.com>
>
>> Hi，
>> I will try it soon.Thank you very much.
>> Best wishes.
>>
>>
>> 2013/11/18 Markus Gschwind <markus.gschwind at gmail.com>
>>
>>> Hi,
>>>
>>> this is manual editing as a explained in my former mail. either you cut
>>> the mask in 2 halves or you copy it twice and erase the other ROI in each
>>> of them. I do not know with what tools you are familair, but it should be
>>> possible in every package.
>>>
>>> Best.
>>> Markus
>>> 2013/11/18 Yachao Xie <yachaoxiexie at gmail.com>
>>>
>>>> Hi dear friends,
>>>>     Thanks for your reply.Can you give me some codes or processes about
>>>> this question？
>>>>     Best wishes.
>>>>
>>>>
>>>> 2013/11/18 Markus Gschwind <markus.gschwind at gmail.com>
>>>>
>>>>> Hi,
>>>>>
>>>>> You would need to separate the two ROIs and create two separate files
>>>>> (copy the file and erase manuall on ROI in both files)
>>>>>
>>>>> Best,
>>>>> Markus
>>>>>
>>>>>  2013/11/18 Yachao Xie <yachaoxiexie at gmail.com>
>>>>>
>>>>>> Hi friends,
>>>>>>      Excuse me for disturbing you.I knew you from the NITRC.I have a
>>>>>> question about the mrtrix.I have a nii file with only two ROIs.I want to
>>>>>> track fibers form one ROI to another.Could you give some suggestion to me?
>>>>>>      Hope for your reply.
>>>>>>      thank you.best wishes.
>>>>>>
>>>>>
>>>>>
>>>>
>>>
>>
>
>
> _______________________________________________
> Mrtrix-discussion mailing list
> Mrtrix-discussion at www.nitrc.org
> http://www.nitrc.org/mailman/listinfo/mrtrix-discussion
>
>


-- 
*Dr J-Donald Tournier (PhD)*

*Senior Lecturer, **Biomedical Engineering*

*Division of Imaging Sciences & Biomedical EngineeringKing's College London*


*A: Department of Perinatal Imaging & Health, 1st Floor South Wing, St
Thomas' Hospital, London. SE1 7EH*
*T: +44 (0)20 7188 7118 ext 53613*
*W: http://www.kcl.ac.uk/medicine/research/divisions/imaging/departments/biomedengineering
<http://www.kcl.ac.uk/medicine/research/divisions/imaging/departments/biomedengineering>*
-------------- next part --------------
An HTML attachment was scrubbed...
URL: <http://www.nitrc.org/pipermail/mrtrix-discussion/attachments/20131118/53411da5/attachment.html>