[Mrtrix-discussion] ExploreDTI to Mrtrix

[Matteo Diano]

Thank you very much!!!! Perfect!
Cheers

Matteo


2013/9/20 Thibo Billiet <thibobilliet at gmail.com>

> Hi Matteo,
>
> I did the same thing (MD-correction in ExploreDTI and then exporting DWIs
> + gradient table to MRtrix).
> Once you have exported the gradient table from Edti you need to rearrange
> the columns (switch column 1 and 2, and change sign of column 3). Also you
> need to add rows of zeroes on top for every b0 image in your dataset.
>
> I wrote a small matlab function to convert the Edti gradient table to the
> MRtrix table. Perhaps it might be useful for you too.
>
> Regards,
>
> Thibo
>
>
> On 19 Sep 2013, at 21:00, mrtrix-discussion-request at www.nitrc.org wrote:
>
> > Send Mrtrix-discussion mailing list submissions to
> >       mrtrix-discussion at www.nitrc.org
> >
> > To subscribe or unsubscribe via the World Wide Web, visit
> >       http://www.nitrc.org/mailman/listinfo/mrtrix-discussion
> > or, via email, send a message with subject or body 'help' to
> >       mrtrix-discussion-request at www.nitrc.org
> >
> > You can reach the person managing the list at
> >       mrtrix-discussion-owner at www.nitrc.org
> >
> > When replying, please edit your Subject line so it is more specific
> > than "Re: Contents of Mrtrix-discussion digest..."
> >
> >
> > Today's Topics:
> >
> >   1. ExploreDTI to Mrtrix (Matteo Diano)
> >
> >
> > ----------------------------------------------------------------------
> >
> > Message: 1
> > Date: Thu, 19 Sep 2013 11:07:53 +0200
> > From: Matteo Diano <matteo.diano at gmail.com>
> > Subject: [Mrtrix-discussion] ExploreDTI to Mrtrix
> > To: mrtrix mailinglist <mrtrix-discussion at www.nitrc.org>
> > Message-ID:
> >       <CAC9t6T+WjvAF0vKUBtp0CdN=
> ESdMFMDPNhzkZ7FOroy+N7aF0A at mail.gmail.com>
> > Content-Type: text/plain; charset="iso-8859-1"
> >
> > Dear Mrtrix experts
> > I use ExploreDTI to correct DWI for motion and eddy currents. I was
> > wondering if you know a way to import the gradient direction, after the
> > preprocessing, from ExploreDTI into the mrtrix. Thank you very much in
> > advance!!!
> > Regards
> > Matteo
> > -------------- next part --------------
> > An HTML attachment was scrubbed...
> > URL:
> http://www.nitrc.org/pipermail/mrtrix-discussion/attachments/20130919/bd84ba82/attachment-0001.html
> >
> > ------------------------------
> >
> > _______________________________________________
> > Mrtrix-discussion mailing list
> > Mrtrix-discussion at www.nitrc.org
> > http://www.nitrc.org/mailman/listinfo/mrtrix-discussion
> >
> >
> > End of Mrtrix-discussion Digest, Vol 56, Issue 5
> > ************************************************
>
>
> _______________________________________________
> Mrtrix-discussion mailing list
> Mrtrix-discussion at www.nitrc.org
> http://www.nitrc.org/mailman/listinfo/mrtrix-discussion
>
>
-------------- next part --------------
An HTML attachment was scrubbed...
URL: http://www.nitrc.org/pipermail/mrtrix-discussion/attachments/20130924/6da6452e/attachment-0001.html