[Mrtrix-discussion] Installation on Mac OS Yosemite ver 10.10.1

[Helen Carlson]

Hello MRTrix experts
I have upgraded to MRTrix 3 (which works fine) but would also like to run MRTrix 0.2.12 for editing ROIs and using some of the older functions and so I am attempting to install it and am getting stuck at the ./build stage (See below for the error message). My operating system is Mac OS Yosemite version 10.10.1. I have installed the dependencies using this command "brew install python glib gtk+ glibmm gtkmm gtkglext gsl". I have installed XCode 6.1, X11, QT 3.2.0.

My $PATH contains: /Applications/mrtrix-0.2.12/bin:/applications/mrtrix3/bin:/Applications/mrtrix-0.2.12/bin:/applications/mrtrix3/bin:/usr/local/bin:/usr/bin:/bin:/usr/sbin:/sbin:/opt/X11/bin

I then change directory to /Applications/mrtrix-0.2.12 and enter ./build. This is the first part of the error I get (it seems to be unable to find the GSL libraries).

bash-3.2$ ./build
[CC] lib/math/vector.o
[CC] src/mrview/sidebar/roi_analysis.o
[CC] cmd/dir2amp.o
[CC] src/mrview/mode/base.o
[CC] lib/file/dicom/quick_scan.o
[CC] lib/image/format/list.o
[CC] cmd/streamtrack.o
[CC] src/mrview/window.o

ERROR: [CC] lib/math/vector.o

clang++ -c -Wall -mtune=native -fPIC -fno-strict-aliasing -DGL_GLEXT_PROTOTYPES -O2 -D_REENTRANT -I/usr/local/Cellar/glibmm/2.42.0/include/glibmm-2.4 -I/usr/local/Cellar/glibmm/2.42.0/lib/glibmm-2.4/include -I/usr/local/Cellar/libsigc++/2.4.0/include/sigc++-2.0 -I/usr/local/Cellar/libsigc++/2.4.0/lib/sigc++-2.0/include -I/usr/local/Cellar/glib/2.42.1/include/glib-2.0 -I/usr/local/Cellar/glib/2.42.1/lib/glib-2.0/include -I/usr/local/opt/gettext/include -Ilib -Isrc lib/math/vector.cpp -o lib/math/vector.o

failed with output:

In file included from lib/math/vector.cpp:25:
lib/math/vector.h:26:10: fatal error: 'gsl/gsl_vector.h' file not found
#include <gsl/gsl_vector.h>
         ^
1 error generated.

Can someone please point me in the right direction so I can fix this?
Thanks


Helen

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