[Mrtrix-discussion] Parameters

[Donald Tournier]

Hi all,

If it helps, most of the parameters are described in this paper:

http://onlinelibrary.wiley.com/doi/10.1002/ima.22005/abstract

Cheers,

Donald.



On 18 March 2014 10:19, Manuel Blesa Cábez <mblesac at gmail.com> wrote:

> I found an interesting paper comparing different parameters in mice's
> tractography
>
> http://www.ncbi.nlm.nih.gov/pmc/articles/PMC2882245/
>
>
> 2014-03-18 10:18 GMT+01:00 Manuel Blesa Cábez <mblesac at gmail.com>:
>
> Hi,
>>
>> My images have 120x110x54 voxels, and the voxel size is 1.4x1.4x2.8. The
>> voxel size was multiplied by 10.
>>
>> Normally I use probabilistic streamtrack and 10 spherical harmonics. But
>> the rest of parameters like streamlines, curvature, step, etc... I don't
>> know, I'm trying to find some papers but at the moment I didn't find
>> anything.
>>
>> Regards,
>>
>> Manuel Blesa
>>
>>
>> 2014-03-17 20:12 GMT+01:00 Manuel Blesa Cábez <mblesac at gmail.com>:
>>
>> Dear all,
>>>
>>> I'm working on small animal brains (mouse) and I don't know what are the
>>> correct parameters to construct the tractography (streamlines, curvature,
>>> etc...). Is someone working with similar data and could give me a little
>>> reference? Thanks in advance
>>>
>>> Best regards,
>>>
>>> Manuel Blesa
>>>
>>
>>
>
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-- 
*Dr J-Donald Tournier (PhD)*

*Senior Lecturer, **Biomedical Engineering*

*Division of Imaging Sciences & Biomedical EngineeringKing's College London*


*A: Department of Perinatal Imaging & Health, 1st Floor South Wing, St
Thomas' Hospital, London. SE1 7EH*
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<http://www.kcl.ac.uk/medicine/research/divisions/imaging/departments/biomedengineering>*
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